Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01281 ATGGCAAAAGATACTTCTGGTTCTGATTCCCATCATAGACGTCATGGCCTTTTAAAAGATCAAGTTCATTTGGTTAAAAGGAGAGACTCTGATCGCTATGAGATTGCTCCAATCCAAGATCAACTATCGTTTGAGAAGGGCTTTTTTATAGTTATTCGTGCATGCCAATTGTTAGCCCAAAAGAATGATGGAATAATATTGGTAGGGGTGGCTGGTCCTTCTGGAGCAGGGAAGACTGTATTTACCGAAAAGATACTCAGCTTCATGCCCAGCATTGCTGTCATTTCAATGGATAACTACAATGATTCTAGTCGAATTGTTGATGGAAATTTTGATGATCCACGCTTAACAGACTATGATACGTTGCTCCAAAACCTACATGATTTAAAGGAAGGAAAGCCCGCCCAGGTTCCTATATATGATTTCAAGTCCAGTTCACGCACAGGATACAGGACAGTAGAAGCCCCAGGTTCCCGTATTGTGATTATCGAGGGCATCTATGCCCTGAGTGAGAAATTACGAACTCTACTGGACCTTCGAGTTTCTGTTACAGGTGGAGTTCACTTTGACCTTGTAAAGAGAGTTATACGTGACATACAACGTGCTGGTCAAGAACCTGAAGAAATTATTCATCAAATATCTGAGACGGTATATCCAATGTACAAGGCTTTTATTGAGCCAGATCTCCAGACAGCACATATAAAGATCATCAACAAATTCAATCCATTTACTGGATTCCAGTGCCCTACTTACATATTAAAGTCAGCGAGGAATGTTACAGTGGATCAAATTAAAGCTGTTCTTGCTGAAGATTTTAAGGAAACAACAGAGCAAACTTATGACATATATCTTCTACCACCCGGTGAAGATCTAGAAACTTGCCAATCATATTTACGGATGCGAAATAAGGATGGAAAATACAGTCTCATGTTTGAGGAATGGGTGACAGATAATCCATTTGTTATATCACCAAGAATTACTTTTGAGGTCAGCGTGCGCCTTCTTGGTGGACTTATGGCCTTGGGATACACAATAGCCACCATCCTTAAGAGAAACAGCCATGTCTATTCTGATGATAGGGTTTGTGTGAAACTAGATTGGCTTGAGCAACTTAATCGACATTATGTTCAGGTACAAGGAAGAGATCGCTTAGTAGTAAAATATGTAGGAGAGCAGCTGGGTCTCGAAGGTTCCTACATTCCTCGTACCTACATTGAGCAAATTCAACTTGAAAAGCTTGTGAATGAGGTTATGGCCCTACCAGATGATTTGAAGACAAAGCTCAGCCTAGATGAGGATTTGGTGTCAAGCCCCAAAGAAGCACTTTCCAGAGCCTCTGCTGACAGGGTTGCCATGAGAAATAAATATCTGAGGAGTGGAATGTCACAATCGTATACAAATCAAAGGGACAAAAATCTAGCCAAAGTCACTGCCAACAATAGAGGGTTTGGTGAAAGAAATTCAGATTCCTCCAGAGCACCAGTAAATCAGGGAGCCATTACTCATCTTTCGGATCAGATTTCTGCCCTCAATGATAGAATGGATGAATTTACAAATCGTATTGAAGAGCTAAACTCCAAGTTAACCATCAAGAAAAATTCTCCAAGCCAACAAAATATGTTAGTTCAAGCCGAGGCCTGTAATGGTTCTGCTCCTACCTCTTATTTCATCACTAGTTTGGGCAATGGTTCTCTGACTGGATCTAAGTTGACAAATTCCTCATCTTCATCACAATTGGCTAAAGATTCTCCTTTAATGGATGAGGTATATTTTCTGTGGCCAATATCATATCTCACTTTCAAAGTTTGTTATTCTCCATAA 1821 0.4025 MAKDTSGSDSHHRRHGLLKDQVHLVKRRDSDRYEIAPIQDQLSFEKGFFIVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKILSFMPSIAVISMDNYNDSSRIVDGNFDDPRLTDYDTLLQNLHDLKEGKPAQVPIYDFKSSSRTGYRTVEAPGSRIVIIEGIYALSEKLRTLLDLRVSVTGGVHFDLVKRVIRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQCPTYILKSARNVTVDQIKAVLAEDFKETTEQTYDIYLLPPGEDLETCQSYLRMRNKDGKYSLMFEEWVTDNPFVISPRITFEVSVRLLGGLMALGYTIATILKRNSHVYSDDRVCVKLDWLEQLNRHYVQVQGRDRLVVKYVGEQLGLEGSYIPRTYIEQIQLEKLVNEVMALPDDLKTKLSLDEDLVSSPKEALSRASADRVAMRNKYLRSGMSQSYTNQRDKNLAKVTANNRGFGERNSDSSRAPVNQGAITHLSDQISALNDRMDEFTNRIEELNSKLTIKKNSPSQQNMLVQAEACNGSAPTSYFITSLGNGSLTGSKLTNSSSSSQLAKDSPLMDEVYFLWPISYLTFKVCYSP. 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01281 606 Coils Coil 500 534 - -
Seca9g01281 606 Gene3D - 66 248 IPR027417 -
Seca9g01281 606 Gene3D - 253 412 - -
Seca9g01281 606 PRINTS Uridine kinase signature 188 198 - -
Seca9g01281 606 PRINTS Uridine kinase signature 65 82 - -
Seca9g01281 606 PRINTS Uridine kinase signature 224 237 - -
Seca9g01281 606 PRINTS Uridine kinase signature 132 147 - -
Seca9g01281 606 PANTHER URIDINE KINASE 16 423 - -
Seca9g01281 606 Pfam Phosphoribulokinase / Uridine kinase family 68 236 IPR006083 GO:0005524|GO:0016301
Seca9g01281 606 CDD UMPK_like 67 239 - -
Seca9g01281 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 236 IPR027417 -
Seca9g01281 606 Pfam CYTH domain 269 404 IPR023577 -
Seca9g01281 606 SUPERFAMILY CYTH-like phosphatases 260 407 IPR033469 -
Seca9g01281 606 ProSiteProfiles CYTH domain profile. 248 410 IPR023577 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01281 Seca-Chr9 22612555 22621076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01281 67 365 PRT Gene Family AT5G40870 26.198 2.83e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01281 K00876 - gmx:100797542 1060.06