LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g01274	ATGGAAAGGAGAGGGGATGTAGCTTTCTTTTGTTTGGCTTTGTTCTTCTTGTGGACTTCAGTAGCTGGTTTGCTTTCTCCTAAAGGTGTCAACTTTGAAGTTCAAGCTCTGATGGGTATTAAGAATTCTCTGGTGGATCCTCATTCTGCCTTAGGAAACTGGGATCCAGATGCTGTGGATCCCTGCAACTGGGCTATGGTCACTTGTTCTTCTGATCGTTTTGTGATTGCCCTTGGGATTCCAAGCCAGAATTTATCTGGTACTCTCTCATCAAGCATAGGCTCCTTAACAAACCTCCAGACTGTGCTACTGCAGGATAATCATATATCAGGACCAATCCCTTCTGAGATTGGGAGGCTCCAAAAGCTTCAAACTCTTGATCTTTCTGACAATTTCTTCATTGGTCAACTTCCAGATACTCTATCCCATATGAAGGGTCTCCATTATTTGCGGCTAAACAATAATAGTCTCACTGGACCAATTCCTTCCTCTTTGGCTAACATGACCCAGCTTGCCTTTTTGGATATCTCTTATAATAACTTGAGTGGACCTGTACCTAGATTAAATGCAAAAACATTCAATATTGTAGGCAATCCCCAGATATGTGCCACAGGAGTTGAGCAAAACTGCTTTAGAACAACATTAATTTCTTCTGTTACGAATAATACTCAAGGTAATCATAGTTTTTTCCTGTTGCAGAATGATTTGTGCTTTTCCAACCTCATGATGTTTCCATTTAAAGCTTTGCCTCATTCACAATCCTCCAATAGACCAAGTAGTCACAAAGTTGCCTTGGCGTTTGCTTCAAGCCTAAGCTGCATCTGCTTACTGATTCTGGGGTTTGGCGTCCTCCTCTGGTGGAGACAAAGATATAACAAGCAAATATTCTTTGATGTCAATGAACAACATCGTGAAGAGATTTGCCTTGGAAACCTCAAGAAGTTCCATTTCAGAGAACTTCAGGTTGCTACAAATAACTTCAGCAGCAAGAACTTGATTGGAAAAGGTGGTTTTGGAAATGTCTACAAAGGCTATCTCTCAGATGGTACAGTTATAGCAGTAAAAAGGCTTAAAGATGGCAATGCCATTGGAGGTGAAATCCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCTGTCCATCGGAATCTTCTTCGCCTGTATGGATTTTGCATGACAGCTACAGAGAGGCTCTTGGTTTATCCCTATATGTCAAATGGTAGTGTAGCTTCCCGTCTGAAAGCCAAGCCAGCTTTAGACTGGCCTACAAGGAAGAGGATAGCTTTAGGAGCTGGAAGAGGCTTGCTATATTTGCATGAGCAGTGTGACCCCAAGATTATTCACAGGGATGTTAAGGCTGCAAATATCTTGCTTGATGATTATTGTGAGGCTGTGGTAGGAGATTTTGGGTTGGCAAAGCTGTTGGACCACAGGGATTCACATGTGACAACAGCAGTGAGAGGCACTGTAGGGCATATAGCCCCAGAGTACCTCTCAACAGGCCAATCCTCTGAGAAAACAGATGTGTTTGGGTTTGGAATTCTTCTACTTGAATTGATATCTGGCCAAAGAGCTCTTGAATTTGGGAAAGCAGCAAACCAGAAAGGAGCCATGCTTGACTGGGTGAAGAAAATACATCAAGAGAAGAAAATTGACTTGTTAGTTGACAAGGACCTGAAAAACAACTATGACAGAATTGAACTAGATGAAATTGTTCAAGTGGCTCTTTTATGTACTCAGTACCTTCCAAGTCATAGACCCAAGATGTCTGAAGTAGTTAGGATGCTTGAAGGAGATGGGCTTGCAGAAAAATGGGAAGCCTCACAGAGAGCTGAATCAACAAGAAGTAAAGGAAATGAACTCTCCTCTTCAGAGCGCTATTCTGATCTTACTGATGACTCTTCATTGCTTGCTCAAGCAATGGAACTTTCTGGACCAAGATGA	1944	0.4203	MERRGDVAFFCLALFFLWTSVAGLLSPKGVNFEVQALMGIKNSLVDPHSALGNWDPDAVDPCNWAMVTCSSDRFVIALGIPSQNLSGTLSSSIGSLTNLQTVLLQDNHISGPIPSEIGRLQKLQTLDLSDNFFIGQLPDTLSHMKGLHYLRLNNNSLTGPIPSSLANMTQLAFLDISYNNLSGPVPRLNAKTFNIVGNPQICATGVEQNCFRTTLISSVTNNTQGNHSFFLLQNDLCFSNLMMFPFKALPHSQSSNRPSSHKVALAFASSLSCICLLILGFGVLLWWRQRYNKQIFFDVNEQHREEICLGNLKKFHFRELQVATNNFSSKNLIGKGGFGNVYKGYLSDGTVIAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTATERLLVYPYMSNGSVASRLKAKPALDWPTRKRIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAANQKGAMLDWVKKIHQEKKIDLLVDKDLKNNYDRIELDEIVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAESTRSKGNELSSSERYSDLTDDSSLLAQAMELSGPR.	648

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca9g01274	647	Pfam	Protein kinase domain	328	594	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca9g01274	647	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	13	607	-	-
	Seca9g01274	647	SUPERFAMILY	Protein kinase-like (PK-like)	306	597	IPR011009	-
	Seca9g01274	647	ProSiteProfiles	Protein kinase domain profile.	327	582	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca9g01274	647	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	30	212	-	-
	Seca9g01274	647	FunFam	Somatic embryogenesis receptor kinase 1	296	403	-	-
	Seca9g01274	647	Gene3D	Ribonuclease Inhibitor	30	212	IPR032675	-
	Seca9g01274	647	SUPERFAMILY	L domain-like	33	195	-	-
	Seca9g01274	647	ProSitePatterns	Protein kinases ATP-binding region signature.	333	355	IPR017441	GO:0005524
	Seca9g01274	647	Pfam	Leucine rich repeat N-terminal domain	33	70	IPR013210	-
	Seca9g01274	647	SMART	serkin_6	327	582	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca9g01274	647	Pfam	Leucine rich repeat	122	181	IPR001611	GO:0005515
	Seca9g01274	647	MobiDBLite	consensus disorder prediction	614	638	-	-
	Seca9g01274	647	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	446	458	IPR008271	GO:0004672\|GO:0006468
	Seca9g01274	647	Gene3D	Transferase(Phosphotransferase) domain 1	404	616	-	-
	Seca9g01274	647	Gene3D	Phosphorylase Kinase; domain 1	296	403	-	-
	Seca9g01274	647	FunFam	Somatic embryogenesis receptor-like kinase 1	404	616	-	-
	Seca9g01274	647	MobiDBLite	consensus disorder prediction	606	647	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g01274	Seca-Chr9	22573051	22577248	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g01274	8	647	Receptor kinase-like Gene Family	AT5G16000	71.649	0.0	938

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Seca9g01274		Pkinase	9.3e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g01274	-		-	gmx:100804283	1127.85