Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01258 ATGCTCATAAAGTACTTAACTCTACTTTACACTCATTTTAGATGGGTGTTAGATTTCCTTTTATATTATCCCCTTTACAAGCTCCAATATGATTGTCATCATGTGCCAATAATTGGAGATCAAGAGATGAGTATATGGCATTATGAAGCCACTACCATTGCAAGGTCAGAGGAAGATGTAGATTGTGCTGTGTGTCTCTGCAAAATTGAAGAAGGAGAAGAGATTAGAGTGCTGAGATGTGAACATATGTTTCACAAAGATTGCTTAAATAGATGGGAAAGTGGTTTCAAGAATTATGCCACTTGCCCTCTTTGCAGAGAATCAGTGGGCCCAAGAAGGGTCATCACTGAGCTTGGTGCTCAAGTTCTGTTCTTTGAGTTTTGTAATTCTATCCGTACTGATGATGACCGCCATACATGGTGGCTACGCTGA 432 0.3981 MLIKYLTLLYTHFRWVLDFLLYYPLYKLQYDCHHVPIIGDQEMSIWHYEATTIARSEEDVDCAVCLCKIEEGEEIRVLRCEHMFHKDCLNRWESGFKNYATCPLCRESVGPRRVITELGAQVLFFEFCNSIRTDDDRHTWWLR. 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01258 143 SUPERFAMILY RING/U-box 55 113 - -
Seca9g01258 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 113 IPR013083 -
Seca9g01258 143 PANTHER - 28 117 - -
Seca9g01258 143 SMART ring_2 62 105 IPR001841 -
Seca9g01258 143 Pfam Ring finger domain 61 106 IPR001841 -
Seca9g01258 143 ProSiteProfiles Zinc finger RING-type profile. 62 106 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01258 Seca-Chr9 22372805 22373236 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01258 57 123 C3H Transcription Factor Family AT1G53820 42.647 6.29e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01258 K16282 - mof:131154354 132.109