Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01257 ATGCAATCTCCTTCTCAGCCTAGTGTGTGCCATTATGTGTCAACCCATGAAGATGTAGATTGCGCTGTGTGTCTCAGCAAAATGAAAGACAGAGAAGAGATTAGAGTGTTGCGGTGTCACCATGTGTTTCACAGAGATTGCTTGGATACTTGGGTGGGCTTCAACAAAGCCACTTGCCCTCTTTGCAGAGATTCACTACTGTGTTCAACAAAGGAGTGA 219 0.4521 MQSPSQPSVCHYVSTHEDVDCAVCLSKMKDREEIRVLRCHHVFHRDCLDTWVGFNKATCPLCRDSLLCSTKE. 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01257 72 SMART ring_2 21 62 IPR001841 -
Seca9g01257 72 ProSiteProfiles Zinc finger RING-type profile. 21 63 IPR001841 -
Seca9g01257 72 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 67 IPR013083 -
Seca9g01257 72 PANTHER - 14 68 - -
Seca9g01257 72 SUPERFAMILY RING/U-box 14 67 - -
Seca9g01257 72 Pfam Ring finger domain 20 63 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01257 Seca-Chr9 22361846 22362064 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01257 20 67 C3H Transcription Factor Family AT1G15100 56.250 1.16e-14 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01257 K16282 - pcin:129296604 85.8853