Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01256 ATGCTCATAGAGTACTTAACTCTAGTTTACGCTCATCTGAAATGGGTGTTAAATTTCCTTCTATCTTATCCCTTTTACAAGCTCCATGATGTGCCAATAATTGGAGATCAAGAGATGAGTATATGCCATTATGAAGCCACCACCCCTGCAGGCTCAGAGGAAGATGTAGATTGTGCAGTGTGTCTCTGCAAAATTGAAGAAGGAGAAGAGATTAGAGTCCTGAGATGTGAACATATGTTTCACAGAGATTGCTTAAATAGATGGGTAAGTAGTGGTTTCAAGAATTATGCTACTTGCCCTCTTTGCAGAGAATCAGTGGGCCCAAGAAGGGCCATAAGTGAAGTTGGAGCTGAAGTTCTTTTATTTGACTTTTGTAATTCTATCCGCACTGATGATGACCGTGATTCATGGTGGTTACGCTAA 423 0.4066 MLIEYLTLVYAHLKWVLNFLLSYPFYKLHDVPIIGDQEMSICHYEATTPAGSEEDVDCAVCLCKIEEGEEIRVLRCEHMFHRDCLNRWVSSGFKNYATCPLCRESVGPRRAISEVGAEVLLFDFCNSIRTDDDRDSWWLR. 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01256 140 SMART ring_2 58 102 IPR001841 -
Seca9g01256 140 Pfam Ring finger domain 57 103 IPR001841 -
Seca9g01256 140 ProSiteProfiles Zinc finger RING-type profile. 58 103 IPR001841 -
Seca9g01256 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 110 IPR013083 -
Seca9g01256 140 PANTHER - 33 114 - -
Seca9g01256 140 SUPERFAMILY RING/U-box 50 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01256 Seca-Chr9 22343492 22343914 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01256 53 120 C3H Transcription Factor Family AT1G53820 42.029 7.85e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01256 K16282 - mof:131154354 140.198