Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01254 ATGTTCATAAAGTACTTGACTCTTGTTTACACTCACCTGAAATGGGTGTTAGATTTCCTTCTATATTATCCCTTTTACAAGCTCCATGATGTGCCAATAATTGGAGATCAAGAGATGAGTATATGGCATTATGAAGCCACTACCATTGCAGGGTCAGAGGAAGATGTAGATTGTGCTGTGTGTCTCTGCAAAATTGAAGAAGGAGAAGAGATTAGAGTGCTGAGATGTGAACATATGTTTCACAAAGACTGCTTAAATAGATGGGAAAGTGGTTTCAAGAATTATGCCACTTGCCCTCTTTGCAGAGAATCAGTGGGCCCAAGAAGGGTCATCACTGAGCTTGGTGCTCAAGTTCTGTTCTTTGAGTTTTGTAATTCTATCCGTACTGATGATGACCGTGATACATGGTGGCTACGCTGA 420 0.4095 MFIKYLTLVYTHLKWVLDFLLYYPFYKLHDVPIIGDQEMSIWHYEATTIAGSEEDVDCAVCLCKIEEGEEIRVLRCEHMFHKDCLNRWESGFKNYATCPLCRESVGPRRVITELGAQVLFFEFCNSIRTDDDRDTWWLR. 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01254 139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 109 IPR013083 -
Seca9g01254 139 SUPERFAMILY RING/U-box 52 109 - -
Seca9g01254 139 ProSiteProfiles Zinc finger RING-type profile. 58 102 IPR001841 -
Seca9g01254 139 PANTHER - 33 113 - -
Seca9g01254 139 SMART ring_2 58 101 IPR001841 -
Seca9g01254 139 Pfam Ring finger domain 57 102 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01254 Seca-Chr9 22323482 22323901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01254 44 132 C3H Transcription Factor Family AT4G28890 36.170 2.85e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01254 K16282 - mof:131154354 128.642