Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01253 ATGGAGAAAGATCACAACTATTCGCAAGCACCATCCATGCCTCCAAGTTTCAACACAACACTTCATGACTACCCTCTTGATCTGTATCCACAAAATCAACATGAAGAACTCATCAAGTTTCGAATTGGTGAAAACAACAACAACAACAACGAGATGGTCATGGATTACAATATGCCTCAAACACAACCACCATCAACAGGCTTCTATGGTGGTACTACTACCACTTCTTTTGATAAACTGAGTTTTGCAGATGTGGTGCAGTTTGCAGATTTTGGACCCAAACTAGCCTTAAACCAAAGCAATAACAAGAACTGTAGTGAAGAATCAGGGATTGACCCTGTGTATTTTCTCAAGTTTCCTGTGTTGAATGACAAGATGGAGGACCAAAATTTGATGGGTGATGGAGAAAATGATGAGAGGTTCAACTTGGTGAGCATGGAAGATAAGTCAAGAGAAGGAGAAGAAGAAGAGGGAATGATGATAAGAGAAGATGAAGAAACAACTCGGGTTGTTTCTGATGACAACAACTCAGTGCAGCAGCATCATCATGAGAAGAATATTCCTTTGGTGCAGCAGCAACAGGAAAACAAGAAGAGGAAGAGACCAAGAACTGTTAAGACAAGTGAAGAAGTTGAGAGTCAGCGCATGACTCACATAGCAGTTGAAAGGAACAGAAGGAAGCAAATGAATGAGCATCTTCGTGTCCTCAGATCCCTCATGCCCGGTTCTTATGTCCAAAGGGGTGATCAAGCTTCTATAATTGGGGGAGCAATAGAGTTTGTGAGGGAATTGGAGCAACTTCTTCAGTGTTTGGAATCACAAAAGAGAAGGAGACTTCTTGGAGAAGCTCAATCAAGACAACAGGTTGGGGATTCATCAGCTCTTGCATCTGCACAACAGCAACAGCCTCCATTCTTTCCACCTTTGCCTTTGCCAAATGATGATGAGCAGATGAAGCTTGTTGAGTTAGAGAGTAGTGGACTTCGTGAAGAAACAGCAGAGAGCAAGTCTTGTTTGGCAGATGTAGAAGTGAAGCTTCTAGGATTTGATGCAATGATCAAAATCCTATCAAGGAGAAGGCCAGGACAGTTGATTAAGACCATTGCTGCCCTTGAAGATCTGCAGCTTATTATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCACTGCAGAAGATATAGCAAGCTCCGTTCAGCAGATACTGAGTTTTATACATGCAAACACTAGCATGTGA 1281 0.42 MEKDHNYSQAPSMPPSFNTTLHDYPLDLYPQNQHEELIKFRIGENNNNNNEMVMDYNMPQTQPPSTGFYGGTTTTSFDKLSFADVVQFADFGPKLALNQSNNKNCSEESGIDPVYFLKFPVLNDKMEDQNLMGDGENDERFNLVSMEDKSREGEEEEGMMIREDEETTRVVSDDNNSVQQHHHEKNIPLVQQQQENKKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQSRQQVGDSSALASAQQQQPPFFPPLPLPNDDEQMKLVELESSGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQILSFIHANTSM. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01253 426 MobiDBLite consensus disorder prediction 290 311 - -
Seca9g01253 426 FunFam Basic helix-loop-helix transcription factor 204 279 - -
Seca9g01253 426 MobiDBLite consensus disorder prediction 147 181 - -
Seca9g01253 426 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 213 264 IPR011598 GO:0046983
Seca9g01253 426 MobiDBLite consensus disorder prediction 194 215 - -
Seca9g01253 426 PANTHER TRANSCRIPTION FACTOR FAMA 149 417 IPR044283 GO:0003700|GO:0010052
Seca9g01253 426 Pfam Helix-loop-helix DNA-binding domain 214 265 IPR011598 GO:0046983
Seca9g01253 426 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 213 283 IPR036638 GO:0046983
Seca9g01253 426 MobiDBLite consensus disorder prediction 147 215 - -
Seca9g01253 426 SMART finulus 219 270 IPR011598 GO:0046983
Seca9g01253 426 Gene3D - 204 279 IPR036638 GO:0046983
Seca9g01253 426 CDD bHLH_AtFAMA_like 216 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01253 Seca-Chr9 22281618 22284396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01253 71 426 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 63.612 3.80e-143 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca9g01253 HLH 9.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01253 K26213 - gmx:100813515 542.347