Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01250 ATGTCAGCGGCGTCGCCGTCTCCGGCGTCTTCCACCGCCGCGCCACCGCCACAATCACAAACACCTTCTTCTTCCAACAATAGTCCGCCACCGTCCTCCGTCGCCACTCCACCGCCGCGGCAACCCACTTCTCCTTCACCTAACAGTTCAGCTTCACCACCGCCAACAACCCCACCACCACCTCAGACCTCCCCACCGCCGGCCACCCCATTAGCTCCTCCCCCAGCCGTGACATCGCCTCCTCCGGCCTCACCTCCATTGCCGCCACCTGCGGCTCCCCCTCCAACGCCACCATCACGCCCACCTCCTCCGTCGCCACAAGCGCCGCCGCCATCTTCTCCGGCACTTCCACCACCCCCATCGCAATCACCGGTTCCGCCACAAAGCTCTCCACCGCCCCCGCCACCACGATCAGCTCCACCACCATCAAACCCACCTAACAACTCATCTCCTCCACCGGCAGCACCACCGCCGGAAAATTCACCCCCTCCTCCAGCCGCCGTGCCACCACCCCGGCGTTCTCCGCCACCCCGAGGTTCACCTCCACCACCACAGTCTGCCCCGCCCCCCAGTAACTCAACTCCTCCGGCATCACCGCCGGTGGCTGTGCCACCACCCAGGTCATCACCACCACCACCACCACCAGCAGCATCCACTCCTCCTCCTGCAACACCAAGTCCTCAACTTGTTCCACCTTCAAATTCTACACCAGGGTCTCCCTCTCCTCCTTCACGCACGCTTCTTTCTCCGCCACCACCAACGCAGAACGGATCAGAAAACTCAAGCCCTGGAAGTGGTGGAATTAGTACTGGTGCTGTAGTGGCTATTAGTATATTCGGTGGTATTCTTCTGCTTGGGTTCATTGGAGTTGCTATCTGGTGCTTGAGGAGACAAAAGAGAAAGGAAACTGTTTCTGATGGTTATGTCATGCCACCCACTCTTCCCTCTTCAACTGGATCAGATTCATCCTTTTTTAAGACACATTCTTCTGCTCCTTTTATAAGAAGTGGCTCTGGCAGTGATGTTGTGTATACACCATCTGACCCTGGTGGATTAGGCAACTCAAGGTCATGGTTTACATATGAGGAACTAATCAAGGCCACAAATGGTTTCTCAAGTCAAAATCTTTTGGGTGAGGGTGGATTTGGTTCTGTTTATAAAGGATGTTTACCTGATGGGAGAGAGATAGCAGTCAAACAGCTGAAAGTTGGTGGAGGCCAAGGGGAGAGAGAATTCAAAGCTGAAGTGGAAATTATTAGTCGCATACATCATCGCCATTTGGTTTCTTTAGTGGGATACTGCATTGAAGATAACAGAAGACTCCTTGTCTATGACTATGTCCCTAACGATACTCTTTATTTTCATCTACATGGGAAAGGTCAGCCTGTGCTAGACTGGGCAAAGCGCGTTAAAATTGCAGCTGGTGCAGCTCGAGGAATAGCTTATCTCCATGAAGACTGTAATCCTCGGATTATTCATAGGGATATCAAGCCATCAAACATTCTTTTGGATCACAACTATGAAGCTCGAGTCTCAGATTTTGGGCTAGCCAAATTAGCTCTTGATGCATATACACATATATCTACACGTGTCATGGGAACTTTTGGGTATGTTGCCCCTGAATATGCATCAAGTGGCAAATTGACTGAGAAGTCTGATGTATTTGCTTTTGGAGTTGTGCTTTTGGAGCTCATTACCGGACGGAAGGCAGTAGATGCATCCCAACCCTTGGGAGATGAGAGTCTAGTTGAATGGGCTCGACCGCTGCTGAGTCAAGCACTTGAGAGTGAAGAATTTGAGAGTTTGGTAGATACAAGGCTAGAAAGAAACTACATTGATAGTGAAATGTTTTGCATGATTGAAGTTGCTGCTGCTTGTGTGCGGCATTCAGCTGCAAAGAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGCTTAGCAGCTTCAGATCTAACTAACGGAATGCGACTTGGGGAAAGCCAGGCCTTTGACTCTGCACAGCAATCTGAAGAAATAAGACTGTTTCGGAGGATGGCATTTGGTAACCAAAATTATAGCTCAGATTTTTTTAGCCAAGGTAGTGTGAATGCATGA 2097 0.5083 MSAASPSPASSTAAPPPQSQTPSSSNNSPPPSSVATPPPRQPTSPSPNSSASPPPTTPPPPQTSPPPATPLAPPPAVTSPPPASPPLPPPAAPPPTPPSRPPPPSPQAPPPSSPALPPPPSQSPVPPQSSPPPPPPRSAPPPSNPPNNSSPPPAAPPPENSPPPPAAVPPPRRSPPPRGSPPPPQSAPPPSNSTPPASPPVAVPPPRSSPPPPPPAASTPPPATPSPQLVPPSNSTPGSPSPPSRTLLSPPPPTQNGSENSSPGSGGISTGAVVAISIFGGILLLGFIGVAIWCLRRQKRKETVSDGYVMPPTLPSSTGSDSSFFKTHSSAPFIRSGSGSDVVYTPSDPGGLGNSRSWFTYEELIKATNGFSSQNLLGEGGFGSVYKGCLPDGREIAVKQLKVGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIEDNRRLLVYDYVPNDTLYFHLHGKGQPVLDWAKRVKIAAGAARGIAYLHEDCNPRIIHRDIKPSNILLDHNYEARVSDFGLAKLALDAYTHISTRVMGTFGYVAPEYASSGKLTEKSDVFAFGVVLLELITGRKAVDASQPLGDESLVEWARPLLSQALESEEFESLVDTRLERNYIDSEMFCMIEVAAACVRHSAAKRPRMGQVVRAFDSLAASDLTNGMRLGESQAFDSAQQSEEIRLFRRMAFGNQNYSSDFFSQGSVNA. 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01250 698 ProSitePatterns Protein kinases ATP-binding region signature. 377 399 IPR017441 GO:0005524
Seca9g01250 698 MobiDBLite consensus disorder prediction 31 250 - -
Seca9g01250 698 MobiDBLite consensus disorder prediction 251 265 - -
Seca9g01250 698 CDD STKc_IRAK 377 647 - -
Seca9g01250 698 SMART serkin_6 371 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01250 698 MobiDBLite consensus disorder prediction 1 265 - -
Seca9g01250 698 MobiDBLite consensus disorder prediction 16 30 - -
Seca9g01250 698 Gene3D Phosphorylase Kinase; domain 1 351 446 - -
Seca9g01250 698 FunFam proline-rich receptor-like protein kinase PERK8 447 658 - -
Seca9g01250 698 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 284 679 IPR047117 -
Seca9g01250 698 Gene3D Transferase(Phosphotransferase) domain 1 447 664 - -
Seca9g01250 698 SUPERFAMILY Protein kinase-like (PK-like) 353 642 IPR011009 -
Seca9g01250 698 FunFam Proline-rich receptor-like protein kinase PERK8 344 446 - -
Seca9g01250 698 Pfam Protein kinase domain 373 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01250 698 ProSiteProfiles Protein kinase domain profile. 371 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01250 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 491 503 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01250 Seca-Chr9 22250384 22257418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01250 167 695 Trihelix Transcription Factor Family AT1G70460 50.622 5.43e-173 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Seca9g01250 Pkinase 5.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01250 - - gmx:100794393 763.837