LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g01248	ATGGCGGAATTGGGTAGGAGAAGAATGAGGGGTGAAAAGAGGAAAAAGCTGCATCTTAGTAAGATCTACTCATTTGCATGTGGGAGGTCATCTTTCAAAGGAGATCATTCACAGATTGGGGGACGTGGCTATTCCAGGTTGGTGTTTTGCAATGAACCAGATAACTTTGAGGCAGGGATTAGGAATTATGCAGATAATTCTGTCAGGTCCACAAAGTATACTCCTGCTACTTTCTTGCCAAAGTCACTGTTTGAGCAGTTTAGGAGGGTGGCTAATTTTTATTTTTTGGTTACTGGTATATTGGCCTTCACAAAGCTTGCTCCTTATACAGCTGTCACTGCTATCCTTCCTCTGACTATCGTTATTGGGGCAACTATGGTCAAAGAGGGTATTGAAGATTGGCGTCGCAAAAAGCAGGATATGGAGGTGAACAATAGAAGAGTTAAAGTGCACAAAGGACATGGAACTTTCGAGTATACTGAGTGGAAGAATCTGAGGGTGGGGCATATAGTAAAGGTAATGAAGGATGAATTTTTCCCTGCTGACCTCCTACTTCTTTCATCCAGCTATGAGGATGCAGTCTGCTATGTTGAGACCATGAACTTGGATGGGGAGACAAATTTGAAGTTAAAACAAGGGTTGGAAGTAACTTCTTCCTTACATGAGGATTTTGAGTTCAGTGATTTTAAGGCTACAATCAAATGTGAAGATCCAAATGCAAATTTATATTCATTTGTGGGGAGCATGGAGTTTGAAGAGCAACAACATCCCCTTTCTCCTCAGCAACTTCTTCTGAGAGACTCTAAACTTCGAAATACGGACTACATATTTGGAGCTGTTGTCTTCACTGGTCATGACACAAAGGTTATTCAAAATTCTACTGATCCCCCTTCAAAGAGAAGCAAAATTGAGAGGAAGATGGACAAAATTATCTACTTCTTGTTTTGCATTTTATTTCTAATGGCATTTGTTGGATCTATTTTCTTTGGCATTGCAACTAAAGATGATTTGGATGATGAGGTGATGAAAAGATGGTATTTAAGACCAGATGATTCTACAATTTTCTTTGATCCTAAAAGAGCACCTGCTGCTGCTATATTTCATAGTTTGACAGCCTTAATGTTATATGGCTTCTTCATTCCCATCTCATTGTATGTATCAATAGAAATTGTCAAAGTTCTTCAAAGCATCTTCATCAATCAAGATATCCATATGTACTATGAAGAAGCAGACAAACCAGCCCATGCCCGTACTTCAAACTTGAATGAGGAACTTGGCCAAGTTGACACAATACTTTCTGATAAAACTGGAACTCTGACCTGCAATTCAATGGAGTTCATCAAATGTTCCATTGCTGGGGTAGCATATGGCCGTGGTGTTACAGAGGTTGAGATGGCCATGGATAGGAAAAATGGTTCTCCTTTGATCAATGATATCAGGGAATCTCCTGATAGAAATACACCCATCAAAGGTTTTAACTTTACAGATGAAAGGATAATGAATGGAAACTGGGTTAATGAGTCTCATGTAGATGTTATCCAGAATTTTTTTCGCTTATTGGCAATCTGTCATACAGCCATTCCAGAAGTGGATGAAGGCACAGGCAATGTCTCATATGAGGCTGAGTCTCCAGATGAAGCAGCATTTGTGATTGCAGCAAGAGAAATTGGTTTTGAATTCTATAAAAGGACTCAGACTAGTTTATCGATGTATGAATTGGATCCAGTTTCTGGTGACAAAGTTGAAAGGATATACAAACTTCTAAATGTTTTAGAATTCAATAGCTCAAGGAAGCGAATGTCGGTAATAGTGAAAGATGAAGAAGGGAGAATTTTGCTACTCTGTAAAGGTGCTGACAGTGTCATGTTTGAAAGGCTTGCCAAGGATGGGAGGGAGTTTGAAGAGAAAACCTCGGAACATGTACATGAATATGCTGATGCAGGTCTAAGAACCCTGATACTTGCGTATCGTGAAATTGATGAAGAACAATACAAGGAGTTTGATAAGAAATTATCTCAAGCAAAAAATTCAGTTAGTGCAGATCAGGAAACAATGATTGAGGAAGTATCAGATAAGATTGAGAGAAATCTAATCCTTCTCGGTGCCACTGCTGTAGAGGACAAGCTCCAAAATGGGGTGGGTTGTGAAAAAAATTTTAACATGTGA	2166	0.392	MAELGRRRMRGEKRKKLHLSKIYSFACGRSSFKGDHSQIGGRGYSRLVFCNEPDNFEAGIRNYADNSVRSTKYTPATFLPKSLFEQFRRVANFYFLVTGILAFTKLAPYTAVTAILPLTIVIGATMVKEGIEDWRRKKQDMEVNNRRVKVHKGHGTFEYTEWKNLRVGHIVKVMKDEFFPADLLLLSSSYEDAVCYVETMNLDGETNLKLKQGLEVTSSLHEDFEFSDFKATIKCEDPNANLYSFVGSMEFEEQQHPLSPQQLLLRDSKLRNTDYIFGAVVFTGHDTKVIQNSTDPPSKRSKIERKMDKIIYFLFCILFLMAFVGSIFFGIATKDDLDDEVMKRWYLRPDDSTIFFDPKRAPAAAIFHSLTALMLYGFFIPISLYVSIEIVKVLQSIFINQDIHMYYEEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVEMAMDRKNGSPLINDIRESPDRNTPIKGFNFTDERIMNGNWVNESHVDVIQNFFRLLAICHTAIPEVDEGTGNVSYEAESPDEAAFVIAAREIGFEFYKRTQTSLSMYELDPVSGDKVERIYKLLNVLEFNSSRKRMSVIVKDEEGRILLLCKGADSVMFERLAKDGREFEEKTSEHVHEYADAGLRTLILAYREIDEEQYKEFDKKLSQAKNSVSADQETMIEEVSDKIERNLILLGATAVEDKLQNGVGCEKNFNM.	722

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca9g01248	721	PANTHER	PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE	42	713	-	-
	Seca9g01248	721	Pfam	Phospholipid-translocating ATPase N-terminal	49	115	IPR032631	-
	Seca9g01248	721	ProSitePatterns	E1-E2 ATPases phosphorylation site.	434	440	IPR018303	-
	Seca9g01248	721	FunFam	Phospholipid-transporting ATPase	542	700	-	-
	Seca9g01248	721	Coils	Coil	657	677	-	-
	Seca9g01248	721	SUPERFAMILY	Calcium ATPase, transduction domain A	149	291	IPR008250	-
	Seca9g01248	721	SUPERFAMILY	HAD-like	420	444	IPR036412	-
	Seca9g01248	721	Gene3D	-	475	707	IPR023299	GO:0000166
	Seca9g01248	721	Pfam	Cation transport ATPase (P-type)	536	626	-	-
	Seca9g01248	721	FunFam	Phospholipid-transporting ATPase	124	294	-	-
	Seca9g01248	721	NCBIfam	phospholipid-translocating P-type ATPase	63	713	IPR006539	GO:0000287\|GO:0005524\|GO:0015914\|GO:0016020\|GO:0140326
	Seca9g01248	721	Gene3D	-	124	294	-	-
	Seca9g01248	721	SUPERFAMILY	Metal cation-transporting ATPase, ATP-binding domain N	499	702	IPR023299	GO:0000166
	Seca9g01248	721	Coils	Coil	718	721	-	-
	Seca9g01248	721	SUPERFAMILY	Calcium ATPase, transmembrane domain M	60	515	IPR023298	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g01248	Seca-Chr9	22239952	22247750	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g01248	17	713	Primary Pumps ATPases	AT1G68710	75.813	0.0	1140

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g01248	K01530		-	gmx:100785037	1269.22