Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01220 ATGGCCCCAAAAATTAGAAGCTCTACCGTTCAAGTAGTTCTTATAGTAGCTTTTTTCATTGTCAATGTTGTTTTATCTGATGATACTGTATCAATTCCTGCTGACAGGCTCCAATTGAGCGCTTGGTTCAATAATAATGTGGCACCCTTAGCTCAAAGAAAGAGTAGTTTGGACCCAGCACTAGTGGCTGCAGAGGAAGGTGCAAAGGTTGTGAAGGTTATGCAAGATGGCAGTGGGGATTTCAAAACCATCACCGAGGCCATTAATAGCATACCTAATGGGAACACTAAGCGTGTGATTGTGTATATTGGTGGTGCAAATTATAATGAGAAAATAAAAATTGAAAGGACAAAACCTTTTGTCACTTTATATGGGGAACCGGAGAACATGCCAAACTTGACATATGGGGGAACTGCACAACAGTATGGCACTGTTGACAGTGCTACTTTGATTGTTGAATCAGATTACTTCATGGCTGCTAACATCATAATCTCGAATTCTGCACCAAGACCTGATGGAAAAAAGAAAGGAGCTCAAGCGGTTGCATTGAGAATTTCTGGTGACAAAGCAACATTTTATAATTGCAAACTATTAGGATTCCAAGATACTTTGTGTGATGATAGGAATAGGCATTTTTTCAAAAATTGCCTAATTCAAGGCACAGTGGATTTTATTTTTGGAAGTGGGAAGTCGCTATATTTGGATACTAAATTGAGAGTACTTGGTGACAATGGGATGAGTGTAATAGTGGCACAAACCAGAAAAAGTGAGACAGAGGATAATGTTTATTCATTTGTGCATTGCAATATTACTGGAACAGGAACCGGCACTTTCTTGGGTAGAGCATGGATGTCTCACTCCAAAGTGATCTTTTCTTACACCACTATGAGCGCTATTGTTAATCCAGCAGGGTGGAGTGACAATAGACACCCTGAATATGATAGTTCTATGTATTTTGGAGAGTATCAGAATAAAGGACCAGGTGCAAATCCCAAAGTGCGTGCCCCCTTCACAAAGCAACTAAGTAAAGAAGGGGTCAAACCTTTCATAACTCTTGGAATGATTGAAGGCTCTAAATGGTTACTTCCTCCTCCGACTCCCAGAGTATAA 1110 0.4 MAPKIRSSTVQVVLIVAFFIVNVVLSDDTVSIPADRLQLSAWFNNNVAPLAQRKSSLDPALVAAEEGAKVVKVMQDGSGDFKTITEAINSIPNGNTKRVIVYIGGANYNEKIKIERTKPFVTLYGEPENMPNLTYGGTAQQYGTVDSATLIVESDYFMAANIIISNSAPRPDGKKKGAQAVALRISGDKATFYNCKLLGFQDTLCDDRNRHFFKNCLIQGTVDFIFGSGKSLYLDTKLRVLGDNGMSVIVAQTRKSETEDNVYSFVHCNITGTGTGTFLGRAWMSHSKVIFSYTTMSAIVNPAGWSDNRHPEYDSSMYFGEYQNKGPGANPKVRAPFTKQLSKEGVKPFITLGMIEGSKWLLPPPTPRV. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01220 369 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 63 361 - -
Seca9g01220 369 FunFam Pectinesterase 66 363 - -
Seca9g01220 369 Pfam Pectinesterase 71 350 IPR000070 GO:0030599|GO:0042545
Seca9g01220 369 ProSitePatterns Pectinesterase signature 2. 218 227 IPR033131 -
Seca9g01220 369 Gene3D - 66 364 IPR012334 -
Seca9g01220 369 SUPERFAMILY Pectin lyase-like 68 366 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01220 Seca-Chr9 21941579 21943210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01220 8 365 Carbohydrate Esterase AT1G69940 54.875 8.70e-152 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01220 K01051 - gmx:100786427 591.652