Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01209 ATGAAAAAGGAAGAAGATCAAGGACAGTGTTCTTCCCAAGCAATCAACAACATGAACAACATTTATCAAGAGCAGCTACTCCTTCAGCAACAGATGCAGCAACAAAACAATAGTGGTGACATATTTGGAAGTAGTGGAAGAGGGTTAATGTTCCCTGAAGTTTCACCAATCTTGCCCCCATGGTCCATGCCACCGGTTCACTCCTTCAACCCGGTCAGATCAGACCATGATCCATCCTCATCATTTCTTGCCCCTCCTCCTCCTCCAGTACCTTATGCAAGCTTTTTCAATAGAAGGGTTCCATCTCTTCAGTTTGCATATCATGAGGGTCCATCTTCTGAGCATCTAAGGATCATATCTGATACCCTTGTTGGACCCATGGTTCAACCCGGTTCAGCTCCCTTTGGACTACAAGCAGAGTTAGGCAAAATGACTGCTCAAGAAATCATGGAAGCTAAGGCTCTTGCAGCATCCAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGAGAGAGAATCAACAACCATCTTGCCAAGCTCCGCAGCTTGTTGCCTAACACCACCAAAACAGATAAGGCTTCGTTGTTAGCGGAAGTGATTCAGCATGTGAAGGAACTGAAGCGTCAAACCTCATTGATAGCGGAAACGAGTCCAGTGCCAACTGAATCTGATGAGTTAACCGTTGATGCATCTGATGAGGATGGAAAGTTTGTGATAAAAGCCTCATTGTGCTGTGAAGATAGATCAGATCTGTTACCTGATCTCATCAAGACACTGAAAGCGTTGAGGTTGAGAACGCTGAAAGCTGAGATCACGACGCTTGGAGGGCGTGTGAAGAACGTGCTGTTCATAACTGGAGATGAGGATTCAAATTGCAATAATAATAATAATAATAATAATAATGGAGATCAACAACAACAGTATTGTATTAGCTCAATACAAGAAGCGCTTAAGGCAGTTATGGAGAAGAGTGGTGGGGACGAATCAGCTTCTGGGAATGTTAAACGCCAAAGGACTAATAATATCAATATCCTTGAACAAAGGTCTTTATGA 1050 0.4352 MKKEEDQGQCSSQAINNMNNIYQEQLLLQQQMQQQNNSGDIFGSSGRGLMFPEVSPILPPWSMPPVHSFNPVRSDHDPSSSFLAPPPPPVPYASFFNRRVPSLQFAYHEGPSSEHLRIISDTLVGPMVQPGSAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTESDELTVDASDEDGKFVIKASLCCEDRSDLLPDLIKTLKALRLRTLKAEITTLGGRVKNVLFITGDEDSNCNNNNNNNNNGDQQQQYCISSIQEALKAVMEKSGGDESASGNVKRQRTNNINILEQRSL. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01209 349 CDD bHLH_AtAIG1_like 151 229 - -
Seca9g01209 349 SMART finulus 162 211 IPR011598 GO:0046983
Seca9g01209 349 FunFam transcription factor bHLH30 151 214 - -
Seca9g01209 349 Pfam Helix-loop-helix DNA-binding domain 159 205 IPR011598 GO:0046983
Seca9g01209 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 205 IPR011598 GO:0046983
Seca9g01209 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 212 IPR036638 GO:0046983
Seca9g01209 349 Gene3D - 151 212 IPR036638 GO:0046983
Seca9g01209 349 PANTHER TRANSCRIPTION FACTOR BHLH30 35 343 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01209 Seca-Chr9 21747591 21750903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01209 11 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 56.712 1.38e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca9g01209 HLH 2.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01209 - - cave:132184452 469.544