Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01202 ATGGCCACTGTTGCAACAAGAGGAATTGGAGTAGGAGTGACAAAGCTCCAACCCCACAAACCCAAGCACAAGTCCTTGTTTCTTGGGCAGAGACTTAGAATTAGACCCTCTGATGAGGCACAAAGCTGTGCAAGACTCATCAGTGTCTCAAACCCAAAAGCCTTTCAAGTGTTTGCACTGGGGGCTGAATGGGTTGACTCAGTTCACAACCTTTTTCTGGGTGTTGGGGTAGGGCTACCTTGCACTGTCATGGAGTGTGGGGACATAATCTACAGGAGCACTCTTCCCAAGTCCAATGGATTGACAATTACTGTCCCTGGTGTGATTCTGGCTTTGGGTGCTCTCTCTTATCTCTGGGCTACACCTGGTGTGGCACCTGGTTTCTTTGACATGTTTGTTCTTGCTTTTGTTGAAAGGTTGTTCAGACCCACTTACAAAAAGGATGATTTTGTTCTGGGGAAGAAATTGGGGGAGGGATCATTTGGAGTTGTTTATAGAGTGTCACTGACCAACAACAACAAGCCCTCTTCAAAGGAAGGTGACCTAGTCTTGAAGAAGGCGACTGAATATGGTGCTGTAGAAATTTGGATGAATGAGCGAGTACGAAGAGCTTGTGCAAACAGCTGTGCAGATTTTGTTTATGGTTTTCTTGAGAGTTCTTCAAAGAAAGCTGCTGAATACTGGCTCATATGGCGGTTTGAAGGGGATGCCACCTTAGCTGATCTTTTGCAGATGACAGTGCCAAAATTTCAGGTTGAAACATTGATTCTGGGTGAGGTCCAGGACTTGCCCAAGGGATTGGAAAGAGAAAATAGAATTATTCAAACAATCATGAGGCAGCTGTTGTTTGCATTGGATGGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCACAAAACATTATTTTCTCTGAAGGGTCTCGGTCATTCAAAATCATTGATCTTGGAGCTGCTGCAGACCTGCGAGTTGGCATCAACTACATTCCTAAGGAGTTTCTTTTGGATCCAAGGTATCTTCTTTGA 1029 0.4461 MATVATRGIGVGVTKLQPHKPKHKSLFLGQRLRIRPSDEAQSCARLISVSNPKAFQVFALGAEWVDSVHNLFLGVGVGLPCTVMECGDIIYRSTLPKSNGLTITVPGVILALGALSYLWATPGVAPGFFDMFVLAFVERLFRPTYKKDDFVLGKKLGEGSFGVVYRVSLTNNNKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLESSSKKAAEYWLIWRFEGDATLADLLQMTVPKFQVETLILGEVQDLPKGLERENRIIQTIMRQLLFALDGLHSTGIVHRDIKPQNIIFSEGSRSFKIIDLGAAADLRVGINYIPKEFLLDPRYLL. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01202 342 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 49 340 - -
Seca9g01202 342 Gene3D Phosphorylase Kinase; domain 1 136 232 - -
Seca9g01202 342 SUPERFAMILY Protein kinase-like (PK-like) 134 337 IPR011009 -
Seca9g01202 342 ProSitePatterns Protein kinases ATP-binding region signature. 156 185 IPR017441 GO:0005524
Seca9g01202 342 Pfam Protein kinase domain 151 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01202 342 ProSiteProfiles Protein kinase domain profile. 150 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01202 342 SMART serkin_6 150 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01202 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 293 305 IPR008271 GO:0004672|GO:0006468
Seca9g01202 342 Gene3D Transferase(Phosphotransferase) domain 1 261 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01202 Seca-Chr9 21637884 21640418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01202 228 323 MAP Kinase Kinase Kinase Kinase AT3G15220 34.375 2.00e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Seca9g01202 Pkinase 2.2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01202 - - gmx:100778588 579.326