Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01198 ATGGATGGAGGTAGTTGCATAGACGAAAGCACCACCACTGAATCACTCTCGATTACCTTATCGCCGGCGAAGAAGCCGTCGTCTCCCCCGCCGCCGAACAGCCTCTGCCGCGTCGGCAGCGGCGCGAGCGCGATCCTTGACCCCGACCTCGCCGGCACCGGAGAAGCTGAATCGCGGAAGCTTCCGTCGTCAAAGTACAAAGGCGTGGTGCCGCAGCCGAACGGGCGTTGGGGAGCGCAGATTTACGAGAAGCACCAGCGCGTGTGGCTCGGCACCTTCAACGAGGAAGACGAAGCCGCCAGAGCCTACGACGTCGCGGCACAACGTTTCCGCGGCAAGGACGCCGTAACTAACTTCAAGCCTCTCGCCACCGCCGGCGACGACGGCTCCGACGGTGACGTGGAGTCGGAGTTCCTCAACTCGCATTCGAAATCCGAGATCGTCGACATGCTTCGGAAGCACACGTACAATGACGAGCTTGAGCAGAGCAAGCGCAGCCGCGGCTTCGTCGGCCGGCGGCAAAGAAACGGCGGAATGGATAACTGTAACACCGGCGCGTGCGAGAAGAAGGCGCGTGAGCCTCTGTTCGAGAAGGCCGTTACGCCTAGTGACGTTGGGAAGTTGAATCGGTTAGTTATACCGAAACAACACGCGGAGAAGCACTTTCCGTTACAGAGTGTCGGCGCGGGAAGCGTTGCTGCGAAGGGTGTTTTGCTGAACTTCGAGGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCTTATTGGAACAGTAGCCAGAGCTACGTGCTTACGAAAGGTTGGAGCCGGTTCGTTAAGGAGAAGAACCTGAAAGCCGGTGACACGGTTTGTTTTCACCGCTCGACCGGACCGGACAAGCAACTCTTTATTGATTGGAAAGCCAGAAGGAATGTTAATGAGGTTGGGTTGTTCAGCCCGGTTGGACCGGTCGTTGAGCCGATTCAGATGGTTCGGCTCTTTGGGGTTAATATTTTGAAACTCCCTGGGTCCGATTCTAATAATGCTAATAATAATAATAATGCCGCTACTGCTCCTATTGCTGGGTGCTGCAATGGCAAGAGGAAAGAAATGGATCTGTTTACGTTAGAGTGTAACAAGAAGCCTAAGATCATTGGAGCTTTGTAA 1146 0.5524 MDGGSCIDESTTTESLSITLSPAKKPSSPPPPNSLCRVGSGASAILDPDLAGTGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGKDAVTNFKPLATAGDDGSDGDVESEFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGFVGRRQRNGGMDNCNTGACEKKAREPLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSVGAGSVAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDKQLFIDWKARRNVNEVGLFSPVGPVVEPIQMVRLFGVNILKLPGSDSNNANNNNNAATAPIAGCCNGKRKEMDLFTLECNKKPKIIGAL. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01198 381 Gene3D - 184 309 IPR015300 -
Seca9g01198 381 MobiDBLite consensus disorder prediction 1 69 - -
Seca9g01198 381 CDD B3_DNA 194 288 IPR003340 GO:0003677
Seca9g01198 381 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 60 346 IPR044800 GO:0003700
Seca9g01198 381 FunFam AP2 domain-containing protein RAP2.8 64 121 - -
Seca9g01198 381 SUPERFAMILY DNA-binding domain 64 120 IPR016177 GO:0003677
Seca9g01198 381 SMART B3_2 196 303 IPR003340 GO:0003677
Seca9g01198 381 SMART rav1_2 65 126 IPR001471 GO:0003700|GO:0006355
Seca9g01198 381 CDD AP2 64 119 IPR001471 GO:0003700|GO:0006355
Seca9g01198 381 Pfam B3 DNA binding domain 196 299 IPR003340 GO:0003677
Seca9g01198 381 Pfam AP2 domain 64 112 IPR001471 GO:0003700|GO:0006355
Seca9g01198 381 SUPERFAMILY DNA-binding pseudobarrel domain 193 300 IPR015300 -
Seca9g01198 381 ProSiteProfiles B3 DNA-binding domain profile. 196 302 IPR003340 GO:0003677
Seca9g01198 381 ProSiteProfiles AP2/ERF domain profile. 65 120 IPR001471 GO:0003700|GO:0006355
Seca9g01198 381 MobiDBLite consensus disorder prediction 1 23 - -
Seca9g01198 381 Gene3D AP2/ERF domain 64 121 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01198 Seca-Chr9 21533888 21535033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01198 5 380 RAV Transcription Factor Family AT1G13260 58.575 2.31e-142 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Seca9g01198 B3 5.2e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01198 K09287 - gmx:100801107 575.089