Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01193 ATGCAACCACCTCACTCTTTCTCCTACATATCCTCTTGTGAGAGTAGTAATGCCTTTTTAGAATCTGATGAAGCCTCAATCTCCCTAACTCTTGGCCTTCCTGGCCAACAGAACCCCAAACAACTGATCTCTTCCTCAAACCAACCTGCTACTCTGCATCATCATCAACCACACCAAAACCCTACATCTGATGATGATAATGATCAGAGTGGTGTAACAGTTGCCCTTCACATTGGCCTTCCCACAAGTGGTTCTTCAAAAAACACCACCCCTATTAGCAAACCTGATCATCATCATAGTCATTTGGGTTCTTCAGGTCCTATTGAGGGTCAATACTGGATCCCTTCTCCAGCTCAAATCCTCATTGGACCAACCCAGTTCTCTTGCACAGTCTGCAACAAAATGTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCACAGTACAGGAAAGGACCTGAATCTTTAAGAGGAGCAAAACCAGCTTCTTCAATGATGAGGCTACCCTGTTATTGCTGTGCTGAGGGTTGCAAGAACAACATAGATCATCCAAGGTCAAGGCCTCTCAAGGATTTCAGGACCCTTCAGACTCACTACAAGAGAAAGCATGGAGCAAAGCCATTTGGGTGCAGAAAGTGTGGGAAACCCTTTGCTGTGAGAGGGGATTGGAGAACCCATGAGAAGAACTGTGGGAAGCTTTGGTTCTGCATATGTGGTTCTGATTTCAAGCATAAGAGGTCCCTCAAAGACCATGTTCGTGCCTTTGGTGATGGACATGCTCCACACACTGTTGAAAGCTGTGATCAACAGGAACATTTAGGGGATGAAGAGGATGATGAATTGGAAGGAGAGGAAGATGAGGATGATCACAGCAATAGCAATAACAGTGGAATGATGTTTAGTTTTAATTAA 924 0.4459 MQPPHSFSYISSCESSNAFLESDEASISLTLGLPGQQNPKQLISSSNQPATLHHHQPHQNPTSDDDNDQSGVTVALHIGLPTSGSSKNTTPISKPDHHHSHLGSSGPIEGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMMRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDQQEHLGDEEDDELEGEEDEDDHSNSNNSGMMFSFN. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01193 307 MobiDBLite consensus disorder prediction 275 293 - -
Seca9g01193 307 MobiDBLite consensus disorder prediction 30 70 - -
Seca9g01193 307 SUPERFAMILY beta-beta-alpha zinc fingers 195 232 IPR036236 -
Seca9g01193 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 127 154 IPR013087 -
Seca9g01193 307 ProSitePatterns Zinc finger C2H2 type domain signature. 129 149 IPR013087 -
Seca9g01193 307 Gene3D Classic Zinc Finger 210 283 - -
Seca9g01193 307 MobiDBLite consensus disorder prediction 30 108 - -
Seca9g01193 307 MobiDBLite consensus disorder prediction 264 307 - -
Seca9g01193 307 FunFam Zinc finger protein WIP2 181 263 - -
Seca9g01193 307 PANTHER ZINC FINGER PROTEIN WIP2 23 284 IPR043584 GO:0003700|GO:0010468
Seca9g01193 307 SUPERFAMILY beta-beta-alpha zinc fingers 123 148 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01193 Seca-Chr9 21483274 21484774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01193 20 268 C2H2 Transcription Factor Family AT1G13290 68.526 7.91e-120 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca9g01193 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01193 - - aprc:113870355 474.937