Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01192 ATGCAATTCGCAGAGAAAATAATGCACCCTCAGAAGATGGGGTTCCGTGACTACATCGAAGCATTGGAAGAAGAAAGGAAAAAAATCCAGGTTTTCCCCAGAGAGCTTCCGCTTTCATTAGAGCTTGTCACGCAAGCCATTGAAGCGTGTAAGCAGCAGTTGTCAGGAACAATGATGGACTATAATTTGAATGGCCAATCGGAGTGTTCAGACCAGACATCAATGGAAGAAGGTCCTGTTTTTGAAGAGTTTATTCCTATTAAGAAAAGAGCATCCCCTGATTGTGATGAAGAAGAAGATGATGATGATGATGAAGAACATTGTCATAAGCACAAGAACAAGAACACCCCTGATAAAAAGAAATCAGATTGGCTCAGATCTGTTCAGTTGTGGAATCCTGATCCCCCTCTTCCTAAAGAGGATTTGCCTAGAAAAACAAATGTTGTGGAAGTGACAAGAAATGGTGGTGCCTTCCAGCCATTCCACAGAGAAGAAAGTGCTGTTGTTGGAAAGACTAATACATCTGCATCTGGTAAATCACCCTCTTCACCACCAGTACCTGCTACAAGTTCTACAGGACCAGCCAGAGTAGACAATGGTGGAAGCAACAAGAGAGAAGAGAAAGGACAGAATCAGAGAAAGCAGCGCCGGTGCTGGTCACAGGAATTGCACAAGCGCTTCTTGCAAGCCCTTCACCAGCTTGGTGGTGCAGATACTGCCACACCAAAACAGATCAGGGAACTGATGAAAGTTGATGGACTCACCAATGATGAAGTCAAAAGTCATTTACAGAAATTTCGTTTGCACACAAGAAGGAGCCCTGTGATTCACAACAATGCTAATTCACAAACAGCTCCTTTGTTCCTTGTGGGAAACATTTATGTTCAACCACCAGAGTATGCTGTGGCCACCACAACAGCATCAGGAGAATTGACCACAGTTACTGCTCCAACTGGAATCTATGCACCTGTGGCTGCACATCCTACAGCTGTCCAGCACACATCAGCTCCTGCAGTTATGAAGGCACAATTAAAGCAATTAGAGATGTCTGAGCATTCACATTCAGAAGAAAGGGCTAATCATAGTGAAGGGGCTGTTCATTCAAACTCCCCTGCCTCATCATCCTCCACCCATACCACCACAAATTCACCTAGGTGTTGA 1161 0.4444 MQFAEKIMHPQKMGFRDYIEALEEERKKIQVFPRELPLSLELVTQAIEACKQQLSGTMMDYNLNGQSECSDQTSMEEGPVFEEFIPIKKRASPDCDEEEDDDDDEEHCHKHKNKNTPDKKKSDWLRSVQLWNPDPPLPKEDLPRKTNVVEVTRNGGAFQPFHREESAVVGKTNTSASGKSPSSPPVPATSSTGPARVDNGGSNKREEKGQNQRKQRRCWSQELHKRFLQALHQLGGADTATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPVIHNNANSQTAPLFLVGNIYVQPPEYAVATTTASGELTTVTAPTGIYAPVAAHPTAVQHTSAPAVMKAQLKQLEMSEHSHSEERANHSEGAVHSNSPASSSSTHTTTNSPRC. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01192 386 MobiDBLite consensus disorder prediction 105 121 - -
Seca9g01192 386 MobiDBLite consensus disorder prediction 156 218 - -
Seca9g01192 386 MobiDBLite consensus disorder prediction 364 386 - -
Seca9g01192 386 MobiDBLite consensus disorder prediction 168 198 - -
Seca9g01192 386 Pfam Myb-like DNA-binding domain 216 265 IPR001005 -
Seca9g01192 386 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 14 355 IPR044787 GO:0003700|GO:0006355
Seca9g01192 386 MobiDBLite consensus disorder prediction 84 121 - -
Seca9g01192 386 SUPERFAMILY Homeodomain-like 212 272 IPR009057 -
Seca9g01192 386 NCBIfam myb-like DNA-binding domain, SHAQKYF class 214 269 IPR006447 GO:0003677
Seca9g01192 386 MobiDBLite consensus disorder prediction 200 218 - -
Seca9g01192 386 Gene3D - 213 271 - -
Seca9g01192 386 MobiDBLite consensus disorder prediction 348 386 - -
Seca9g01192 386 FunFam Myb family transcription factor 213 271 - -
Seca9g01192 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 271 IPR017930 -
Seca9g01192 386 MobiDBLite consensus disorder prediction 348 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01192 Seca-Chr9 21464676 21466763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01192 1 326 G2-like Transcription Factor Family AT1G68670 48.563 2.13e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca9g01192 Myb_DNA-binding 3.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01192 - - gmx:100819750 491.115