Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01179 ATGAAAAATATGCAAAGCTTCAAGACAGCACAATCAAGCTCTCAACTTTATTGCCACCCCTCCTTCTTGCTTCGGGGAGATGACACCAACCGAAACCCAACGCGTTTCTCTGATCTTGGAGAGCTTCACCATTCCTCTTCTGTCTTTCAACACCAAGATGCTGTTGATTTAAGCTCAAGCTCTATGTTTAGTGTAAAGTCAAGCAACGTTGTTGTTGGTGGTAGTAACATGCAATATGGGACATTGAACACGGTTAATGTTGGGTCTGCAGAGATTGCTTCAACAGGGGCAGGGTGCTTGGATACAGGGCAGCAGCTAATGTACCACAAGGGAATCACCATGGCTACCTTGCCTTTGGGGAATGGTCATGTTGAGAATTGGGCTGATTCAGGCATGGCAGATAATAGCCAACAGACAGATGATACTTCCACAGATATTGATACTGATGATAAAAATCAAAGCAATAGAATTAAGAATGGGGCACAAATGGTTGTGCACTCCAAGGACCAGACAAAACTCAGAGCTGAAGATCAGAAGACCCTTCGTAGACTGGCTCAGAACAGGGAAGCTGCAAGGAAGAGTCGGTTAAGGAAAAAGGCATATGTACAGCAGTTGGAGAACAGCCGAGCTAGGCTTTCGCAATTAGAACAAGAGCTTCAACGGGCACGTCAGCAGGGTATATTTATTGCAACTCCAGGGGATCAAGGTCATTTGGCTGTTGGAAATGGTGCCTTGGCCTTTGACATGGACTACGCCCATTGGGTTGATGAGCATCAACGTCTGCTGAATGACCTAAGATCAGCTCTAAATTCTCAAATGGGTGATAATGAACTAAATGTTCTTGTAGATGGTGTCATGGCACATTATGATGAACTATTTAGGTTAAAGAGCATAGGGGCAAAGGCTGATGTATTTCATATGCTATATGGGCCTTGGAAGACACCAGTAGAAAGATGTTTCATGTGGCTTGGTGGATTCCGGTCATCTGAACTTCTCAAGATAGTTCAAAATCACCTTGAGCCATTAACAGAACAGCAGTTGATGGGCATTTTGAATCTGCAGCGGTCTTCCCAGCAAGCTGAGGATGCTTTGACTCAAGGCATGGAAGCATTGCAACAATCTCTTATAGAGACACTTTCCTCCACCTCCCTAGGACCCACTGGTACTGGTAATGTTGCTGATTACATGGGCCAAATGGCAATTGCAATGAGCAAGCTTGCCACACTGGAGAATTTCCTTCGTCAAGTAAGAGATGCAATCTCTTCAAGGAGCTAA 1275 0.4471 MKNMQSFKTAQSSSQLYCHPSFLLRGDDTNRNPTRFSDLGELHHSSSVFQHQDAVDLSSSSMFSVKSSNVVVGGSNMQYGTLNTVNVGSAEIASTGAGCLDTGQQLMYHKGITMATLPLGNGHVENWADSGMADNSQQTDDTSTDIDTDDKNQSNRIKNGAQMVVHSKDQTKLRAEDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRARLSQLEQELQRARQQGIFIATPGDQGHLAVGNGALAFDMDYAHWVDEHQRLLNDLRSALNSQMGDNELNVLVDGVMAHYDELFRLKSIGAKADVFHMLYGPWKTPVERCFMWLGGFRSSELLKIVQNHLEPLTEQQLMGILNLQRSSQQAEDALTQGMEALQQSLIETLSSTSLGPTGTGNVADYMGQMAIAMSKLATLENFLRQVRDAISSRS. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01179 424 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 177 221 IPR004827 GO:0003700|GO:0006355
Seca9g01179 424 CDD bZIP_HBP1b-like 179 231 - -
Seca9g01179 424 Coils Coil 198 225 - -
Seca9g01179 424 SUPERFAMILY Leucine zipper domain 179 222 IPR046347 GO:0003700|GO:0006355
Seca9g01179 424 Pfam bZIP transcription factor 178 220 IPR004827 GO:0003700|GO:0006355
Seca9g01179 424 FunFam BZIP family transcription factor 178 227 - -
Seca9g01179 424 PANTHER TRANSCRIPTION FACTOR TGA9 123 415 - -
Seca9g01179 424 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 182 197 IPR004827 GO:0003700|GO:0006355
Seca9g01179 424 MobiDBLite consensus disorder prediction 128 154 - -
Seca9g01179 424 SMART brlzneu 175 244 IPR004827 GO:0003700|GO:0006355
Seca9g01179 424 Gene3D - 178 227 - -
Seca9g01179 424 ProSiteProfiles DOG1 domain profile. 244 424 IPR025422 GO:0006351|GO:0043565
Seca9g01179 424 Pfam Seed dormancy control 262 336 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01179 Seca-Chr9 21262883 21267348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01179 6 415 bZIP Transcription Factor Family AT1G68640 54.976 3.23e-149 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca9g01179 DOG1 2.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01179 K14431 - gmx:100797393 635.18