Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01174 ATGTCTTCCATTCTCGACTCCCTCCCGCTATTTGGCTTCTCTTTCGTCACCCAGTACCGCTCCTCCTTCGTCGACTGCACTATTTGCTTGTTGAAGTTTGAGCAGTGCAATCTCCTCCCCCGCCTCCTCCTTCTATGTTGCCATGTTTTCCAAGTTGAATGCTTCGACACTTGGCTTCGGTCGAACCACACCTGTATGCTCTGTCGTTCTACCATCTTTACTTTGGAATCATACCTCATGAAGGTTTTTGTGCCGTCTTCCACCGTCAGCGACAATAGCTTCCTGCTAGAGACAAATAATGTTGATCAGCAGCCATCGTGCATAGGTGTGTTTTGA 336 0.4821 MSSILDSLPLFGFSFVTQYRSSFVDCTICLLKFEQCNLLPRLLLLCCHVFQVECFDTWLRSNHTCMLCRSTIFTLESYLMKVFVPSSTVSDNSFLLETNNVDQQPSCIGVF. 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01174 111 ProSiteProfiles Zinc finger RING-type profile. 26 69 IPR001841 -
Seca9g01174 111 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 3 76 - -
Seca9g01174 111 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 73 IPR013083 -
Seca9g01174 111 Pfam Ring finger domain 25 69 IPR001841 -
Seca9g01174 111 SUPERFAMILY RING/U-box 25 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01174 Seca-Chr9 21177468 21177803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01174 3 74 C3H Transcription Factor Family AT2G18650 45.833 4.45e-15 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01174 K10663 - qsu:112036414 102.064