Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01151 ATGGTTGAGCCTCCTATTCAATCAGCTAATCACTCAAAAAAGTTAAAACAAAAGCACAATTCATTCCATGACTCCAAAATCACAAGAAAACTGCGCATCATCTATGATGATCCTGATCCCTATGCAACTGAGTCTTCGGATGAAGATGAGCATTTTGAGAAGCCTAAGAAGGTGAGGAGAACCGTGCTTGAGGTCACTCTCCCCCTTGTTTCAGTTAACTCTGTCTCTCTTGATGAAGCCAGCACCGAGACCTCAAGCAACAATGGATTGAACAAGAAGAGGGTTTTAGCCAAAACCCCTTCAATGAAGAGGCAACCTGGTAGCAAATACAAAGGTGTTCGAATGAGGAAATGGGGCAAATGGGCTGCAGAGATTCGTGACCCATTCAAGGGTCAACGCCAATGGTTAGGAACCTACAACACTGCTGAAGAGGCTTCACAAGCCTATGAGAACAAAAGGCTTGAATTTGAAGCTAGGGCCAAGGCTCTATCTGATGAGAAGAGTATCAACAACAACAACAATGTTGTTGTCTCTGTTGAAACTATGGCTACCCCAGAAAAGAATAGCCACAATAGCTGTGTTTCTTCTGCTGCAGCTTCTGTATCAGACTCCAAGTCTGCTGCTTTGGAGGACTCAGAGAGTGCCTTGTCACACACATCACCTCCTTCTGTGCTGGAATTGGATACCTCAGCTTCCAATTTGATTGAGAGTGGTAAGGTTTCAACCAACGAAGCTGCTGAGACCATTGGTTTGGAGGCTGAATTTGCCAAGCTGGAAATGCCAGATTTTAGCCTTTTGAACATTCCATCACCATCTGCTGTTGCTGCAGCCACTCCATCTCGGTTTGGATTGGATTGGTTGGCCGTTGATGGTTTTGAACAGGGCTATGAAGATTTTGGTGGCCTGGAGGACATTCAAATTTGTGGCTTTGATGATGAAGGGCCTAGTGAACTTCCTGATTTTGATTTTGATGACTTTGGTGTTGATGAGTTTGCTGGTTGGATTGAAGAACCCCTCAATATACCATGCGTATAA 1035 0.4444 MVEPPIQSANHSKKLKQKHNSFHDSKITRKLRIIYDDPDPYATESSDEDEHFEKPKKVRRTVLEVTLPLVSVNSVSLDEASTETSSNNGLNKKRVLAKTPSMKRQPGSKYKGVRMRKWGKWAAEIRDPFKGQRQWLGTYNTAEEASQAYENKRLEFEARAKALSDEKSINNNNNVVVSVETMATPEKNSHNSCVSSAAASVSDSKSAALEDSESALSHTSPPSVLELDTSASNLIESGKVSTNEAAETIGLEAEFAKLEMPDFSLLNIPSPSAVAAATPSRFGLDWLAVDGFEQGYEDFGGLEDIQICGFDDEGPSELPDFDFDDFGVDEFAGWIEEPLNIPCV. 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01151 344 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Seca9g01151 344 SMART rav1_2 109 163 IPR001471 GO:0003700|GO:0006355
Seca9g01151 344 Gene3D AP2/ERF domain 108 164 IPR036955 GO:0003700|GO:0006355
Seca9g01151 344 CDD AP2 108 149 IPR001471 GO:0003700|GO:0006355
Seca9g01151 344 SUPERFAMILY DNA-binding domain 108 156 IPR016177 GO:0003677
Seca9g01151 344 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Seca9g01151 344 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Seca9g01151 344 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 29 231 - -
Seca9g01151 344 Coils Coil 139 166 - -
Seca9g01151 344 Pfam AP2 domain 108 158 IPR001471 GO:0003700|GO:0006355
Seca9g01151 344 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01151 Seca-Chr9 20983931 20985269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01151 14 343 AP2-EREBP Transcription Factor Family AT1G68550 33.523 6.24e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca9g01151 AP2 7.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01151 - - gmx:102667919 405.216