Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca9g01151 | ATGGTTGAGCCTCCTATTCAATCAGCTAATCACTCAAAAAAGTTAAAACAAAAGCACAATTCATTCCATGACTCCAAAATCACAAGAAAACTGCGCATCATCTATGATGATCCTGATCCCTATGCAACTGAGTCTTCGGATGAAGATGAGCATTTTGAGAAGCCTAAGAAGGTGAGGAGAACCGTGCTTGAGGTCACTCTCCCCCTTGTTTCAGTTAACTCTGTCTCTCTTGATGAAGCCAGCACCGAGACCTCAAGCAACAATGGATTGAACAAGAAGAGGGTTTTAGCCAAAACCCCTTCAATGAAGAGGCAACCTGGTAGCAAATACAAAGGTGTTCGAATGAGGAAATGGGGCAAATGGGCTGCAGAGATTCGTGACCCATTCAAGGGTCAACGCCAATGGTTAGGAACCTACAACACTGCTGAAGAGGCTTCACAAGCCTATGAGAACAAAAGGCTTGAATTTGAAGCTAGGGCCAAGGCTCTATCTGATGAGAAGAGTATCAACAACAACAACAATGTTGTTGTCTCTGTTGAAACTATGGCTACCCCAGAAAAGAATAGCCACAATAGCTGTGTTTCTTCTGCTGCAGCTTCTGTATCAGACTCCAAGTCTGCTGCTTTGGAGGACTCAGAGAGTGCCTTGTCACACACATCACCTCCTTCTGTGCTGGAATTGGATACCTCAGCTTCCAATTTGATTGAGAGTGGTAAGGTTTCAACCAACGAAGCTGCTGAGACCATTGGTTTGGAGGCTGAATTTGCCAAGCTGGAAATGCCAGATTTTAGCCTTTTGAACATTCCATCACCATCTGCTGTTGCTGCAGCCACTCCATCTCGGTTTGGATTGGATTGGTTGGCCGTTGATGGTTTTGAACAGGGCTATGAAGATTTTGGTGGCCTGGAGGACATTCAAATTTGTGGCTTTGATGATGAAGGGCCTAGTGAACTTCCTGATTTTGATTTTGATGACTTTGGTGTTGATGAGTTTGCTGGTTGGATTGAAGAACCCCTCAATATACCATGCGTATAA | 1035 | 0.4444 | MVEPPIQSANHSKKLKQKHNSFHDSKITRKLRIIYDDPDPYATESSDEDEHFEKPKKVRRTVLEVTLPLVSVNSVSLDEASTETSSNNGLNKKRVLAKTPSMKRQPGSKYKGVRMRKWGKWAAEIRDPFKGQRQWLGTYNTAEEASQAYENKRLEFEARAKALSDEKSINNNNNVVVSVETMATPEKNSHNSCVSSAAASVSDSKSAALEDSESALSHTSPPSVLELDTSASNLIESGKVSTNEAAETIGLEAEFAKLEMPDFSLLNIPSPSAVAAATPSRFGLDWLAVDGFEQGYEDFGGLEDIQICGFDDEGPSELPDFDFDDFGVDEFAGWIEEPLNIPCV. | 345 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca9g01151 | 344 | ProSiteProfiles | AP2/ERF domain profile. | 109 | 166 | IPR001471 | GO:0003700|GO:0006355 | |
Seca9g01151 | 344 | SMART | rav1_2 | 109 | 163 | IPR001471 | GO:0003700|GO:0006355 | |
Seca9g01151 | 344 | Gene3D | AP2/ERF domain | 108 | 164 | IPR036955 | GO:0003700|GO:0006355 | |
Seca9g01151 | 344 | CDD | AP2 | 108 | 149 | IPR001471 | GO:0003700|GO:0006355 | |
Seca9g01151 | 344 | SUPERFAMILY | DNA-binding domain | 108 | 156 | IPR016177 | GO:0003677 | |
Seca9g01151 | 344 | PRINTS | Ethylene responsive element binding protein signature | 132 | 148 | IPR001471 | GO:0003700|GO:0006355 | |
Seca9g01151 | 344 | PRINTS | Ethylene responsive element binding protein signature | 110 | 121 | IPR001471 | GO:0003700|GO:0006355 | |
Seca9g01151 | 344 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 29 | 231 | - | - | |
Seca9g01151 | 344 | Coils | Coil | 139 | 166 | - | - | |
Seca9g01151 | 344 | Pfam | AP2 domain | 108 | 158 | IPR001471 | GO:0003700|GO:0006355 | |
Seca9g01151 | 344 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca9g01151 | Seca-Chr9 | 20983931 | 20985269 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca9g01151 | 14 | 343 | AP2-EREBP Transcription Factor Family | AT1G68550 | 33.523 | 6.24e-41 | 144 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Seca9g01151 | AP2 | 7.5e-10 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca9g01151 | - | - | gmx:102667919 | 405.216 |