Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01146 ATGACTTCTTCCATGAACATGGCGAATGGCAGCAAAACAGCAAGAGCCTGTGATATCTGCATAACAAAATCAGCACTCTATTACTGTGCTTCTGATGATGCTTTCCTCTGCCACACTTGTGACTATTCTGTTCACTCTGCTAATCCATTGGCTCGCAGGCACCAAAGAGTTCTCTTGAAAACAATTGCCACTTGTAACAAGTACTCCTCCAAAGCATCTACAAATAGGAACCTCAATTGTGTTCCATCTTGGCAGTGGCACAGAGGGTTCACCAAGAAACCCAGAACACCAAGACATGGTAAGCATTACTCTACCATCACAACAACAACAACTAAGGCAAGGAAGCAATTATGTCTTGTACCTGAAGTGGGTGATACAAATTCCCATGAAGAGAATGGGGAGGAACAAGTTCTTTATAGGGTGCCTAATTTGGTTGGTGCTCTTGAGGTTGAAAGCCAGAGGAAAGTTTTGTTGGGTTGTGACTATGATGGAGTTGAGAGTGAAAGTTTAAATGGATTTGTTTCATCGGATATTGAGCTTGCTGCTGATATTGAGAGTTTGTTGGGGAAGGGACTAGAGGAGGATCAGTGCATGGGAATGGAAGAGTTGGGGCTAATTGATTGCAAAGAAGGGGAGTGTTGTGTGGGAAGTGGAAAGGTGAAGGTGGAAGAGGAAAATCAGGTGGAGATGGGGAGAGAATTAGCATTTGAATTGAGATCATTTGATAATGATGACTCAACATGTGAAAAGGTTGGTTTGGATGTGACCAAAGATGTGCAGAATGGTGGAGGGAATAATAACCATAACCAAGGAAAGAGGAAGATATTGTTGCAGTTAGATTATGAAGCAGTAATCACTGCTTGGAAAAGCAAAAAGTCACCATGGACTACTGCTGGTAAACCAGACTTCCTCACTGATCACTGCATGGTGGGAAGTTATGGAATGGGGCTTCACCAGGCTTATGGTGAATTGTTTGGGTGTGATGGAGCAGCAACAAAGGGATATGGGGAAAGAGAAGCGAGGGTATCAAGATATAGAGAAAAGCGGCAAACAAGGTTGTTCTCGAAGAAAATAAGGTATGAGGTTCGAAAATTGAACGCAGAGAAGAGACCCCGAATCAAAGGCAGGTTTGTAAAGAGGGCTACCTTTGCAGCAGTTGCACCTTCCCTAAACAAATAA 1179 0.4317 MTSSMNMANGSKTARACDICITKSALYYCASDDAFLCHTCDYSVHSANPLARRHQRVLLKTIATCNKYSSKASTNRNLNCVPSWQWHRGFTKKPRTPRHGKHYSTITTTTTKARKQLCLVPEVGDTNSHEENGEEQVLYRVPNLVGALEVESQRKVLLGCDYDGVESESLNGFVSSDIELAADIESLLGKGLEEDQCMGMEELGLIDCKEGECCVGSGKVKVEEENQVEMGRELAFELRSFDNDDSTCEKVGLDVTKDVQNGGGNNNHNQGKRKILLQLDYEAVITAWKSKKSPWTTAGKPDFLTDHCMVGSYGMGLHQAYGELFGCDGAATKGYGEREARVSRYREKRQTRLFSKKIRYEVRKLNAEKRPRIKGRFVKRATFAAVAPSLNK. 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01146 392 SMART bboxneu5 12 59 IPR000315 GO:0008270
Seca9g01146 392 Pfam CCT motif 338 380 IPR010402 GO:0005515
Seca9g01146 392 Pfam B-box zinc finger 14 58 IPR000315 GO:0008270
Seca9g01146 392 CDD Bbox1_BBX-like 16 59 - -
Seca9g01146 392 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 8 382 - -
Seca9g01146 392 ProSiteProfiles Zinc finger B-box type profile. 12 59 IPR000315 GO:0008270
Seca9g01146 392 ProSiteProfiles CCT domain profile. 338 380 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01146 Seca-Chr9 20909254 20911366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01146 1 380 C2C2-CO-like Transcription Factor Family AT1G25440 39.953 2.05e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca9g01146 zf-B_box 4.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01146 - - lang:109339476 344.739