Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01141 ATGAGACCAGAAGAAAACCCTTTAGATCTCAACAATTTGCCTGATGACTACTCTAGAGATGGTAAACAAGTCCTCCAAGATACCTCCTCATCAGGGTGCAAGAAAAAGAAAAGTGGGGTGAAGGATGGAAAGGAGGAGTGTGGGAAGGTGTACGAGTGTAGATTTTGCTCTCTCAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGTCACCGCCAAGAGAGGGAAACTGAGACGCTGAACCATGCTCGTCAGCTGGTCTACCGTAACGATCATAACATAACCAACCAAGGTGCCCCCCACCAAGGATACTGTCAACCAATAGCATCATCAGGAGGGAGCTATCATAACAATATGGGAGACCCAACAATGCGTGTGAGATTCCCAAGATCCTCAACGCACATATCACCACAACAACAACCACCATTCTTAAATCCCTCACCTTCAAGGCCTTTCTCACCATTTCACTCACACTATAATAATCCTGTGAACGAATACTATGTGGGACATGTCCTGAATAATGGGCACCATCACAACTTGAACTATGTGGGAGGAGGAGGAGGAGAGTCAAATTACAGTTGCATTGGGGCACCCGTAGGACAAGTATTGGGTAAGGACAGGACAGTAGTACTGCAGAATCAGCTGGAGGAAGGGATGAATTGGGGAAGGAGCTATAATTCAGGATCAACACATCACCTATTGGATCCTTCTTCATCGATCAATCGGTTTCAAGATGGCTTCTAA 750 0.4627 MRPEENPLDLNNLPDDYSRDGKQVLQDTSSSGCKKKKSGVKDGKEECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVYRNDHNITNQGAPHQGYCQPIASSGGSYHNNMGDPTMRVRFPRSSTHISPQQQPPFLNPSPSRPFSPFHSHYNNPVNEYYVGHVLNNGHHHNLNYVGGGGGESNYSCIGAPVGQVLGKDRTVVLQNQLEEGMNWGRSYNSGSTHHLLDPSSSINRFQDGF. 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01141 249 Gene3D Classic Zinc Finger 27 104 - -
Seca9g01141 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 78 IPR013087 -
Seca9g01141 249 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Seca9g01141 249 PANTHER ZINC FINGER PROTEIN JAGGED 21 208 IPR045320 GO:0003700
Seca9g01141 249 SUPERFAMILY beta-beta-alpha zinc fingers 49 79 IPR036236 -
Seca9g01141 249 MobiDBLite consensus disorder prediction 1 41 - -
Seca9g01141 249 FunFam Zinc finger protein STAMENLESS 1 26 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01141 Seca-Chr9 20845274 20847819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01141 4 202 C2H2 Transcription Factor Family AT1G13400 47.343 1.20e-36 127