LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g01137	ATGGTCTTTGCATACATTGAACTGTGGTATTCATATGCAAAGACATACACAGGAACCGTGAATGTGCTAAACTCCTGCGTAAAAGCAAAGGTGAAACGGGTGGTGCTCACATCTTCATGTTCTTACATAACATACCGTGATGATATGCAACAAATCTCCCCTCTTAATGAATGTCACTGGAGTGATACAGAATACTGTAAACGCCATAATTTGTGGTATTCATATGCAAAGACATACACAGGAACCGTGAATGTGCTAAACTCCTGCGTAAAAGCAAAGGTGAAACGGGTGGTGCTCACATCTTCATGTTCTTCCATAACATACCGTGATGATATGCAACAAATCTCCCCTCTTAATGAATGTCACTGGAGTGATACAGAATACTGTAAACGCCATAATCTGTGGTATTCATATGCAAAGACATACACAGGAACCGTGAATGTGCTAAACTCCTGCGTAAAAGCAAAGGTGAAACGGGTGGTGCTCACATCTTCATGTTCTTCCATAACATACCGTGATGATATGCAACAAATCTCCCCTCTTAATGAATGTCACTGGAGTGATACAGAATACTGTAAACGCCATAATCTGTGGTATTCATATGCAAAGACATACACAGGAACCGTGAATGTGCTAAACTCCTGCGTAAAAGCAAAGGTGAAACGAGTGGTGCTCACATCTTCATGTTCTTCCATAACATACCGTGATGATATGCAACAAATCTCCCCTCTTAATGAATGTCACTGGAGTGATACAGAATACTGTAAACGCCATAATCTGTGGTATTCATATGCAAAGACATACACAGGAACCGTGAATGTGCTAAACTCCTGCGTAAAAGCAAAGGTGAAACGGGTGGTGCTCACATCTTCATGTTCTTCCATAACATACCGTGATGATATGCAACAAATCTCCCCTCTTAATGAATGTCACTGGAGTGATACAGAATACTGTAAACGCCATAATTTGTGGTATTCATATGCAAAGACATACACAGGAACCGTGAATGTGCTAAACTCCTGCGTAAAAGCAAAGGTGAAACGGGTGGTGCTCACATCTTCATGTTCTTCCATAACATACCGTGATGATATGCAACAAATCTCCCCTCTTAATGAATGTCACTGGAGTGATACAGAATACTGTAAACGCCATAATCTGTGGTATTCATATGCAAAGACATACACAGGAACCGTGAATGTGCTAAACTCCTGCGTAAAAGCAAAGGTGAAACGGGTGGTGCTCACATCTTCATGTTCTTCCATAACATACCGTGATGATATGCAACAAATCTCCCCTCTTAATGAATGTCACTGGAGTGATACAGAATACTGTAAACGCCATAATCTGTGGTATTCATATGCAAAGACATACACAGGAACCGTGAATGTGCTAAACTCCTGCGTAAAAGCAAAGGTGAAACGAGTGGTGCTCACATCTTCATGTTCTTCCATAACATACCGTGATGATATGCAACAAATCTCCCCTCTTAATGAATGTCACTGGAGTGATACAGAATACTGTAAACGCCATAATTTGTGGTATTCATATGCAAAGACATACACAGGAACCGTGAATGTGCTAAACTCCTGTGTAAAAGCAAAGGTGAAACGGGTAGTGCTCACATCTTCATGTTCTTCCATAACATACCGTGATGATATGCAACAAATCTCCCCTCTTAATGAATGTCACTGGAGTGATACAGAATACTGA	1710	0.4076	MVFAYIELWYSYAKTYTGTVNVLNSCVKAKVKRVVLTSSCSYITYRDDMQQISPLNECHWSDTEYCKRHNLWYSYAKTYTGTVNVLNSCVKAKVKRVVLTSSCSSITYRDDMQQISPLNECHWSDTEYCKRHNLWYSYAKTYTGTVNVLNSCVKAKVKRVVLTSSCSSITYRDDMQQISPLNECHWSDTEYCKRHNLWYSYAKTYTGTVNVLNSCVKAKVKRVVLTSSCSSITYRDDMQQISPLNECHWSDTEYCKRHNLWYSYAKTYTGTVNVLNSCVKAKVKRVVLTSSCSSITYRDDMQQISPLNECHWSDTEYCKRHNLWYSYAKTYTGTVNVLNSCVKAKVKRVVLTSSCSSITYRDDMQQISPLNECHWSDTEYCKRHNLWYSYAKTYTGTVNVLNSCVKAKVKRVVLTSSCSSITYRDDMQQISPLNECHWSDTEYCKRHNLWYSYAKTYTGTVNVLNSCVKAKVKRVVLTSSCSSITYRDDMQQISPLNECHWSDTEYCKRHNLWYSYAKTYTGTVNVLNSCVKAKVKRVVLTSSCSSITYRDDMQQISPLNECHWSDTEY.	570

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca9g01137	569	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	76	141	IPR036291	-
	Seca9g01137	569	PANTHER	NAD DEPENDENT EPIMERASE/DEHYDRATASE	458	519	-	-
	Seca9g01137	569	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	391	456	IPR036291	-
	Seca9g01137	569	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	267	330	IPR036291	-
	Seca9g01137	569	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	517	567	IPR036291	-
	Seca9g01137	569	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	457	520	IPR036291	-
	Seca9g01137	569	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	331	394	IPR036291	-
	Seca9g01137	569	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	204	267	IPR036291	-
	Seca9g01137	569	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	14	79	IPR036291	-
	Seca9g01137	569	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	142	205	IPR036291	-
	Seca9g01137	569	Gene3D	-	206	268	-	-
	Seca9g01137	569	Gene3D	-	458	520	-	-
	Seca9g01137	569	Gene3D	-	11	79	-	-
	Seca9g01137	569	Gene3D	-	269	331	-	-
	Seca9g01137	569	Gene3D	-	521	569	-	-
	Seca9g01137	569	Gene3D	-	332	394	-	-
	Seca9g01137	569	Gene3D	-	143	205	-	-
	Seca9g01137	569	Gene3D	-	395	457	-	-
	Seca9g01137	569	Gene3D	-	80	142	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g01137	Seca-Chr9	20815756	20823105	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g01137	454	555	Monolignol Biosynthesis Gene Families	AT2G33590	35.294	8.43e-09	55.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g01137	-		-	gmx:100796608	115.161