Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01125 ATGCCTTTCTCCAATGAAAACCTTTTGGATCAACAACCTAAGCTCCAAGCCATGCAGACCAATACTCAGTCTGAGAATCATCCAAATAATCCTATCACTCTGATTCCATCATCAGCCTCTGCCTACAGTACAACCATATATGATCATAAACAAGCAGAGGCCATGCATGTAGCAGAAAGCTTAAGGGATTCTTTTCCTCCATATTCTGCAACTGGTTGTGCTGAAAAGAATAAGAATCTGGTTGGAAACAAAAGGAAGAGAAACAGTGAAAGGCTTAAAGAGAAAGAAAATGAAGTAATCCATGTAAGGGCAAAAAGAGGCCAAGCAACTGATAGTCACAGTTTAGCAGAAAGGGTGAGGAGAGAGAAAATCAATGAGAAGATGAGATGTTTGCAAGAATTGGTTCCAGGGTGCTACAAGGCAATGGGAATGGCAGTAATGTTAGATGTGATAATAAATTATGTTCTATCACTACAGCAGCAAATTGAGTTTCTATCCATGAAGCTTTCAGCAGCAAGTATGTGTTTTGATTTCAACACTTCAGAGATGAATGTCACAGAGACCATGCAGAGGGGTGCTAGCACACATGATATACAAGAGATGGAAAGGATAGCTGGAGAAGGTTATGGTGGGATCTGCTATGTCAACCCAACATGGTCATTTAATTGA 669 0.4021 MPFSNENLLDQQPKLQAMQTNTQSENHPNNPITLIPSSASAYSTTIYDHKQAEAMHVAESLRDSFPPYSATGCAEKNKNLVGNKRKRNSERLKEKENEVIHVRAKRGQATDSHSLAERVRREKINEKMRCLQELVPGCYKAMGMAVMLDVIINYVLSLQQQIEFLSMKLSAASMCFDFNTSEMNVTETMQRGASTHDIQEMERIAGEGYGGICYVNPTWSFN. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01125 222 Gene3D - 108 171 IPR036638 GO:0046983
Seca9g01125 222 CDD bHLH_AtBPE_like 98 179 - -
Seca9g01125 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 106 176 IPR036638 GO:0046983
Seca9g01125 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 108 158 IPR011598 GO:0046983
Seca9g01125 222 SMART finulus 114 164 IPR011598 GO:0046983
Seca9g01125 222 Pfam Helix-loop-helix DNA-binding domain 112 136 IPR011598 GO:0046983
Seca9g01125 222 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 31 190 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01125 Seca-Chr9 20671964 20673653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01125 94 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 70.085 1.34e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca9g01125 HLH 0.00014 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01125 - - aprc:113869931 308.145