Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01123 ATGGAAGATCACACTAAGAGAATAAACCCTTCTTCCACCACGTGCTTAAAACTCTTCGGTTTCAGCGTCCACGAAGACATCGACGACGAAGCAGCAGCAACTCTCGAAGACGCGTCAGACTCACTCGCCAAGTCCACCACTTCCCCCTCCGGCTCCACGGACTCCGGCGGTGGCGCCGCCGGCTTAAACCCTTCCTCCGGCGACCGGAAATACGAGTGTCAGTACTGCTGCAGAGAGTTCGCAAACTCGCAAGCACTTGGCGGACACCAAAACGCGCACAAGAAAGAGCGTCAACAGCTCAAGCGTGCACAGTTACAGGCTACACGAAACGCTGCCGTTTCGTTCGTTCGGAACCCGATTATCTCCGCCTTCGCTCCTCCGCCGCACCTGCTAGCGACGCCGGGTCCCGTGGTGGTGCCGGCAGCTCCGCCTTCGTGGGTTTACATGCAGCCACGTGCCGCGCCTCCTCCGTTCCACGTGTCGGTTTCACACGGCTGTGTGTTCCCGTCAGCGAACAACAGCAGCAACGGTAACGGTGTTAGTAACTGTAACGGTGGTGGCAACAACTATAGCATTATAACGGGTGCGAGATCCGCGAGCTCAGGAGTGTTACCTTACGTTGGCGGAGTAGGAGATTCGTCACCCGCATTGTCAACGATGGGCTCGCAAGTACAGGCCCGGGCCCACTTTGGAAGGGTTGATGGGCCATCTTTGAGTAGGTTTACTAAAGGAGATGTGGGCCCTAATTTTGATGATGGATTCGGCTTGGATTTGCACCTTAGCCTAGCACCACCGTAA 798 0.5639 MEDHTKRINPSSTTCLKLFGFSVHEDIDDEAAATLEDASDSLAKSTTSPSGSTDSGGGAAGLNPSSGDRKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQATRNAAVSFVRNPIISAFAPPPHLLATPGPVVVPAAPPSWVYMQPRAAPPPFHVSVSHGCVFPSANNSSNGNGVSNCNGGGNNYSIITGARSASSGVLPYVGGVGDSSPALSTMGSQVQARAHFGRVDGPSLSRFTKGDVGPNFDDGFGLDLHLSLAPP. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01123 265 MobiDBLite consensus disorder prediction 39 60 - -
Seca9g01123 265 SUPERFAMILY beta-beta-alpha zinc fingers 67 98 IPR036236 -
Seca9g01123 265 FunFam Zinc finger protein GIS3 59 121 - -
Seca9g01123 265 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Seca9g01123 265 Gene3D Classic Zinc Finger 60 118 - -
Seca9g01123 265 PANTHER ZINC FINGER PROTEIN 5 9 264 IPR044299 GO:0010090
Seca9g01123 265 MobiDBLite consensus disorder prediction 32 64 - -
Seca9g01123 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 98 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01123 Seca-Chr9 20598599 20599396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01123 11 264 C2H2 Transcription Factor Family AT1G68360 45.926 2.28e-55 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01123 - - tpra:123911684 370.548