Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01122 GTTTTTAAAAAAATTCACAAGAGACTTGAAGGAGAAAACCAGTTCACCTCACCTCACAACCGAAGAACCCTAAGTCGCACGTCCCAATTCCCATTTCCCGGCATTTCTTCTCTGTTCTCCTGTCCACAATACCACGCCAGAGTTCGTCACTGCCCAACTCTCTGTTCGCCGGTGTTCTCTGTCCGTCGTGCTCGCAGCCTCTGTTCGCCAAGCCCTGCTCTAAGCCATTGTCCCAGCCGGCGGTTCTCTATTGTTGCCCAGCCACGTTTCCTTCCCTTTTGTTGTGCGAAACTGATTAGGTTCAACTGGATCAAGTTTTATAACATTGGCTCAAATCGATGGCATGCTGTTGCTTCATGGACTTGGGATGCCCAAGATGAAACGTGTGGAATTTGTAGGATGGCTTTCGATGGATGTTGTCCTGACTTTTGGGGTGCATGCAATCACGCATTTCATTTGCACTGTATTCTTAAATGGGTGAATTCTCAGACATCACAAGCTCATTGTCCCATGTGCCGTCGGGAATGGCAGTTTAAAGGATGA 543 0.4788 VFKKIHKRLEGENQFTSPHNRRTLSRTSQFPFPGISSLFSCPQYHARVRHCPTLCSPVFSVRRARSLCSPSPALSHCPSRRFSIVAQPRFLPFCCAKLIRFNWIKFYNIGSNRWHAVASWTWDAQDETCGICRMAFDGCCPDFWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG. 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01122 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 180 IPR013083 -
Seca9g01122 180 CDD RING-H2_APC11 126 178 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Seca9g01122 180 PANTHER RING BOX 111 179 - -
Seca9g01122 180 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 112 179 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Seca9g01122 180 ProSiteProfiles Zinc finger RING-type profile. 129 173 IPR001841 -
Seca9g01122 180 SUPERFAMILY RING/U-box 112 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01122 Seca-Chr9 20582762 20591150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01122 125 179 C3H Transcription Factor Family AT5G41350 36.364 6.17e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01122 K03358 - csav:115718402 157.918