Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01120 ATGGCCACCACGCAAGCTAGTGGTGGCAGCGGCGGCGGCGTTGCCATAATGCCAGGCACTGTAACCTCCACGGATCCTTCCAGTTCGAGCACTTGCTCCAACACCTCCCTCCTCCTCCAATCGCCGATTCTCATATTCTCTTTGTTTCACAAAGCCATTAACTCTGAGCTCCAGTCCCTCCACCAAGCGGCCTTGGATTTCGTTTCCAACCACGATGATCCCTCTGACCTAAAATCCTTGTCCCACCGCTGTCACTTTCTTCGCACCATCTATAAGCACCACTGTAATGCCGAGGACCAGGTCATATTTCCTGCCTTAGATAAACGTGTGAAGAATGTTGCAAGCGCGTATTTTTTGGAACATGAGGGGGAGGGTCTTCTTTTCAATCAGTTGTTCGAGCTGCTAAATTCCAATTTGCTAAATGAAGAGAGCTATCGAAGAGAATTAGCTTCTTGTACTGGAGCCCTTCGAACATCAATTAGCCAGCATATGTTTAAGGAAGAGGAACAGGTCTTCCCTTTGGTCATTGAGAAATTTTCATCTGAAGAGCAGGCATCATTAGTATGGCAATTTCTTTGTAGCATACCAGTTAAAATGATGGCAGAATTTCTTCCCTGGCTTGCTTCATATATATCATCTGATGAGCATCAGGATCTACTTAGGTGCTTGTGCACAATTATTCCCAAAGAGAAGCTCCTTCATCAGGTCATCTTTGGATGGATGGAGGGACTAAACATTAAATGCACAAACTGCACGCATGATACTAAGGTTCAATGGCAGGATGCTGGAACAAGCAATTTACCCAGTCATAATAATGAAAAGGAGTACTGTGACTGTGGACCTTCCAAAACTGTCAAAAGGAAATGGGTGGAGCTAAGTGAAGATCCTAACAATTCCACTTTATCATGTCCTTTAGATGAATTATTACTTTGGCATAAGGCTATAAAGCAAGAATTGAGTGATTTAGCTGAGACAGCTAGGAAGATGCACCTATCTGAAGAATTTTCTGACTTGTCTTCATTTAATGGGAGGCTTCAATTTATAACTGAAGTCTGCATCTTTCATAGCATTGCTGAGGACAAAGTTATATTTCCCGCCATAAATTCAGAGCTGGATTTTTTCCAAAACCACACAAATGAAGAACTCCAATTTGACAATCTGAGGTGCCTGATAGAAGGTATCCAAAGTGCTGGAGCCAACCCCTCCTCCCCTGAGTTTTATATTAGGTTGAGCTCCCATACTGAACAAATAATGAAAACTGTACTGAAGCACTTTGAAAATGAGGAAGCTCAGGTTCTTCCACTTGCACGAAAGCTATTTAGCCACCAAAGGCAACGAGAATTACTTTATGAAAGCTTGTGCTTGATGCCCTTGAAATTGATCGAAAGCGTATTACCATGGTTAGTAGGATCACTTAGTGAAACAGAAGTTAGGTCGTTTCTTCAGAATATGTATATGGCAGCCCCGGCTTCAGATCATGCACTGGTTACCCTTTTTTCTGGTTGGGCATGCAACAGACATTCCAGAAACAGTTGCTTCTCTTCAAGTGTGATAGGTTTATGTCCTGCCAGGAGATTGATGGAGACGGAAAGCACTAGCCTATCATTTTGCATGTGTGAACCTTCATTCAGTCCCAATGAAAAATCTTCGCACGTTAAACAAGATGATGCAAATAGTGACATTGGACCAGTCAAGCATGGAAATCCAGAACCAAAGCAAGACAATGATGCTTCTAACTTGATGGTAACAAGAGAAACTCTTAACTCACCTAATAATCAGTCTTGCTGTGTCCCTGGATTAGGGGTGAACACAAATCATCTAGGAGGTGGTTCTTTTTCCCTAACAAAGTCTCTGCGAGCCTTATCTGATTGTCCATCTGCACCTTTCCTCAATTCCAGTCTTTTTATGTGGGAAACTGATGTAGTCTCTGTTGACAATCAATTTACAACAAGGCCTATTGATAACATATTTAAATTTCACAAAGCCATCCGTAAAGACTTGGAATATTTAGATGTTGAATCCGGAAAACTTAATGATTGTGATGATATTTTCATTCAGCAATTCACTGGTAGATTGTGCTTGTTGTGGGGTTTGTATAGAGCTCATAGTAATGCAGAAGATGATATAGTATTTCCAGAATTAGAGTCAAAAGAGAATCTTCACAATGTGAGCCATTCTTACACTTTGGACCACCAGCAGGAAGATAAGTTATTTTTGGATATTTCTTCTGGACTCACCCAGCTTACTCGATTACATGAATTACTAAATAAAAGGATTTCGTCTGACCATCTAATCAACTGTTACCCTAATTATGCTGATTGCTCTGATACCATACAAAATTATAACGAGCTCTCTACAAAGATTCAGGGCATGTGCAAGTCTATCAGAGTGACACTAGATCAACATCTTCTTAGGGAGGAACTTGAATTATGGCCCTTGTTTGATAAACACTTTTCTGTGGAAGAACAAGATAAGATTGTTGGTCGTATAATTGGTACTACAGGGGCAGAGGTTCTCCAATCAATGTTGCCATGGGTAACTACTGCTCTCACACAAGATGAGCAAAACAAAATGATAGACACATGGAAACAGGCTACCAAAAACACTATGTTCAATGAGTGGCTTAATGAGTGGTGGGAAGGACCTGCTTCATCTTCAAATATCACTACACCTCGAGACCATTCACTAGGTACTGATGCCTATGAAGACTCAGAGCATAGCTTTCAAGCCTTCAGGCCTGGATGGAAAGATATATTCAGGATGAACCAGAATGAACTTGAATCAGAAATAAGAAAAGTTTCTCGAGATTCAACTCTTGATCCAAGAAGAAAAACATATCTAATTCAAAATCTAATGACCAGTCGCTGGATAGCTTCTCAGCAGAAGTCATCTCAAGCAACAGGAGGTGAATCTTCTAAATTAAAAGATTTGTTGGAAACTTCTCCTTCATTTCGTGATCCAGAGAAAAAATCCTTTGGTTGCGAACATTACAAAAGAAATTGTAAACTCCGTGCTGCCTGCTGTGGAAAGCTATTCACGTGTAGGTTCTGCCATGACAAAGTTAGCGACCATTCAATGGATAGGAAGGCTACGACTGAGATGATGTGCATGCGCTGCCTTCAAATACAGCCTGTTGGACCAGTTTGTGTAACACCTTCCTGTGGTCGTCTCTTAATGGCAAAGTACTACTGTAGTATTTGCAAATTTTTTGATGATGAAAGGACAGTTTATCATTGCCCTTTCTGCAATCTATGCCGTCTGGGAAAGGGACTTGGTGTTGACTTCTTTCATTGCATGCAGTGTAATTGTTGCTTGTCAATGAAATTGGTCGATCACCTATGCCGGGAAAAAGGTTTAGAAACAAACTGCCCCATCTGCTGTGATTTTTTGTTCACATCCAGTGCATCTGTCAGAGCTCTCCCTTGTGGTCATTTCATGCATTCCGCTTGCTTTCAGGCATATACATGCAGTCACTACATCTGTCCTATTTGTAGCAAATCTTTGGGGGATATGGCGGTAAGAGATACACCATACGAAACTATCAATGCCAATTCGACCTAA 3561 0.4125 MATTQASGGSGGGVAIMPGTVTSTDPSSSSTCSNTSLLLQSPILIFSLFHKAINSELQSLHQAALDFVSNHDDPSDLKSLSHRCHFLRTIYKHHCNAEDQVIFPALDKRVKNVASAYFLEHEGEGLLFNQLFELLNSNLLNEESYRRELASCTGALRTSISQHMFKEEEQVFPLVIEKFSSEEQASLVWQFLCSIPVKMMAEFLPWLASYISSDEHQDLLRCLCTIIPKEKLLHQVIFGWMEGLNIKCTNCTHDTKVQWQDAGTSNLPSHNNEKEYCDCGPSKTVKRKWVELSEDPNNSTLSCPLDELLLWHKAIKQELSDLAETARKMHLSEEFSDLSSFNGRLQFITEVCIFHSIAEDKVIFPAINSELDFFQNHTNEELQFDNLRCLIEGIQSAGANPSSPEFYIRLSSHTEQIMKTVLKHFENEEAQVLPLARKLFSHQRQRELLYESLCLMPLKLIESVLPWLVGSLSETEVRSFLQNMYMAAPASDHALVTLFSGWACNRHSRNSCFSSSVIGLCPARRLMETESTSLSFCMCEPSFSPNEKSSHVKQDDANSDIGPVKHGNPEPKQDNDASNLMVTRETLNSPNNQSCCVPGLGVNTNHLGGGSFSLTKSLRALSDCPSAPFLNSSLFMWETDVVSVDNQFTTRPIDNIFKFHKAIRKDLEYLDVESGKLNDCDDIFIQQFTGRLCLLWGLYRAHSNAEDDIVFPELESKENLHNVSHSYTLDHQQEDKLFLDISSGLTQLTRLHELLNKRISSDHLINCYPNYADCSDTIQNYNELSTKIQGMCKSIRVTLDQHLLREELELWPLFDKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTTALTQDEQNKMIDTWKQATKNTMFNEWLNEWWEGPASSSNITTPRDHSLGTDAYEDSEHSFQAFRPGWKDIFRMNQNELESEIRKVSRDSTLDPRRKTYLIQNLMTSRWIASQQKSSQATGGESSKLKDLLETSPSFRDPEKKSFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLQIQPVGPVCVTPSCGRLLMAKYYCSICKFFDDERTVYHCPFCNLCRLGKGLGVDFFHCMQCNCCLSMKLVDHLCREKGLETNCPICCDFLFTSSASVRALPCGHFMHSACFQAYTCSHYICPICSKSLGDMAVRDTPYETINANST. 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01120 1186 MobiDBLite consensus disorder prediction 959 988 - -
Seca9g01120 1186 Gene3D nmb1532 protein domain like 648 877 - -
Seca9g01120 1186 ProSiteProfiles Zinc finger RING-type profile. 1123 1165 IPR001841 -
Seca9g01120 1186 FunFam Zinc finger protein-related isoform 1 1118 1167 - -
Seca9g01120 1186 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 695 1173 - -
Seca9g01120 1186 CDD Hr-like 656 812 - -
Seca9g01120 1186 SMART ring_2 1123 1164 IPR001841 -
Seca9g01120 1186 SMART ring_2 1036 1082 IPR001841 -
Seca9g01120 1186 CDD Hr-like 45 173 - -
Seca9g01120 1186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1118 1167 IPR013083 -
Seca9g01120 1186 Gene3D nmb1532 protein domain like 308 451 - -
Seca9g01120 1186 Gene3D nmb1532 protein domain like 41 193 - -
Seca9g01120 1186 FunFam Zinc finger protein BRUTUS 647 877 - -
Seca9g01120 1186 MobiDBLite consensus disorder prediction 545 577 - -
Seca9g01120 1186 SUPERFAMILY Zinc hairpin stack 1060 1115 IPR037275 -
Seca9g01120 1186 Pfam Hemerythrin HHE cation binding domain 46 175 IPR012312 -
Seca9g01120 1186 Pfam Hemerythrin HHE cation binding domain 652 813 IPR012312 -
Seca9g01120 1186 SUPERFAMILY RING/U-box 1122 1168 - -
Seca9g01120 1186 Pfam CHY zinc finger 994 1069 IPR008913 GO:0008270
Seca9g01120 1186 CDD RING-H2_Pirh2-like 1122 1165 - -
Seca9g01120 1186 SUPERFAMILY CHY zinc finger-like 987 1050 IPR037274 GO:0008270
Seca9g01120 1186 MobiDBLite consensus disorder prediction 1 28 - -
Seca9g01120 1186 ProSiteProfiles Zinc finger CTCHY-type profile. 1059 1122 IPR017921 -
Seca9g01120 1186 ProSiteProfiles Zinc finger CHY-type profile. 987 1056 IPR008913 GO:0008270
Seca9g01120 1186 MobiDBLite consensus disorder prediction 959 978 - -
Seca9g01120 1186 CDD Hr-like 306 434 - -
Seca9g01120 1186 Pfam Ring finger domain 1122 1164 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01120 Seca-Chr9 20569672 20578732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01120 41 1173 C2H2 Transcription Factor Family AT3G18290 60.957 0.0 1372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01120 K16276 - gmx:100783072 1928.68