Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01115 ATGCCAACACCACCTTCTCTTTCCATCTTCTCCTTAACCTTCCACTTCCTTTTCCTCCTTCTACAAGCCTCCAACACCCCAGACTTCCAACCACTCATGGCCTTCAAAACCGCTTCCGACACTACCAACAAACTCAACACATGGAACTCCACCACCCACCCATGCACCTGGCACGGTGTCTCCTGTCTCAGAAACCGCGTCTCTCGCCTCGTCCTCGAAGACCTCAACCTCCAAGGCTCCATCCAACCCTTAACCTCTCTCACTAACCTCCGACTCCTCAGCCTTAAACGCAACCGTTTTAACGGTCCCATTCCCAACCTCTCCAATCTCACCGCCTTAAGGCTTCTCTTCCTCTCTCACAACAACTTCTCCGGTGAGTTCCCCTCATCGCTCACGTCCCTCACTCGCCTCTACCGTCTCGATCTGTCCCACAACAACCTCTCCGGCGAGATTCCGGCTACGGTCAACCGTTTGACGCACCTTCTCACTCTCCGCGTTGACCAGAACCAAATCCAAGGCCACATTCCGGACTTAAACCTCTCATATCTTCAAGACTTCAACGTCTCCAGTAACAACCTATCGGGTCGAATACCCGAAACCCTCTCGGGTTTCCCCGGATCCGCTTTCGAGCAAAACCCGTCTCTCTGTGGAGCTCCATTGCAGAAATGCAAAGACGTCCCTGCACTTGCTACACCATTGGTTCCTACCCCAGCAACAACAACTGTGCCATCTTCTCCGAGTTCAATGCCCGAAAACGAATCAGTAGACAAGACCCGAAAAAACGGAGCTCCGAAAATGGGGCCGATGGTTCTAATCGCGATTGTACTCGGTGATGTTTTGGTGCTAGCCGTGGTTTCACTGCTTCTCTACTGCTACTTCTGGCGAAACTACAATGCTGAGTTCAGGGAAGGGAAAGCAGGGTCGTCGAATTCAAAGCGTGTGGAGGGTGAAAAGATGGTTTATACTTCGAGTGTTTCCGCTGGACAACAGGGTTTGGAGAAGGGTAGAATGGTGTTCTTTGAAGGGGTGAAGAGGTTTGAGCTAGAGGACTTGTTGCGTGCCTCTGCGGAAATGCTGGGGAAGGGTGGGTTTGGCACAGCTTACAAGGCTGTTCTTGATGATGGAACAGTTGTTGCTGTGAAGAGGCTCAAGGAGATTCAAATTGGAGGAAAGAGAGAGTTTGAGCAGCGAATGGAAATGCTGGGAAGGTTAAGAAACCCCAACATTGTTAGCTTAAGAGCTTACTATTTTGCAAGGGATGAGAAATTGCTTGTCTGTGATTACATGCCTAATGGTAGCTTGTTCTGGCTCCTTCACGTGAACAGGAATCCCATCCATGTAGGGTACCTAGATCCAATAGCAGTTTTTTTGTTAGGGTCCACAATCCACTTTGATAATTTGAAGTTGGACCATGTGATCATGAATGGTAACCGAGGACCCGGGAGAACCCCACTGGACTGGACCACGAGGCTCAAGATAGCAGCTGGAGCGGCACGAGGTGTGGCTTTCATTCACAACTCGTGCAAGTCCCATAACCATAATAATAATATCACCCACGGTAACATCAAATCCACAAACATACTCGTTGACGTGGCGGGGAATGCACGCGTGGCGGATTTTGGGCTCTCCATCTTCGCGGGCCCATCAAACGGAAGATCCAATGGCTACCGGGCTCCGGAGGCATCGGACGGTCGAAAACAGTCCCAGAAGGCTGATGTGTACTCCTTTGGCGTTCTTCTGATGGAGATGCTGACGGGGAAGTGCCCATCCGCCGTGGACGGCGGCGGCACGGCGGTGGACCTCCCTAGGTGGGTTCAATCCGTGGTGAGAGAGGAATGGACCGCTGAGGTGTTTGATCTTGAGCTGATGAGGTACAAGGATATTGAGGAGGAAATGGTGGCGCTGCTTCAGATAGCTATGGCGTGCACTACGACTGCACCTGATCAACGGCCCAGGATGAGCCACGTGGTTAAGATGATCGAGGAGTTGCGTGGGGTCGAGGTTTCACCGTGTCATGACACGTTGGACTCGGTTTCTCAGTCACCTTCCGTGTCTGAAGATGCACGTGGAGGTGGAGCTAGCGTTTCTACCGACTAG 2097 0.5174 MPTPPSLSIFSLTFHFLFLLLQASNTPDFQPLMAFKTASDTTNKLNTWNSTTHPCTWHGVSCLRNRVSRLVLEDLNLQGSIQPLTSLTNLRLLSLKRNRFNGPIPNLSNLTALRLLFLSHNNFSGEFPSSLTSLTRLYRLDLSHNNLSGEIPATVNRLTHLLTLRVDQNQIQGHIPDLNLSYLQDFNVSSNNLSGRIPETLSGFPGSAFEQNPSLCGAPLQKCKDVPALATPLVPTPATTTVPSSPSSMPENESVDKTRKNGAPKMGPMVLIAIVLGDVLVLAVVSLLLYCYFWRNYNAEFREGKAGSSNSKRVEGEKMVYTSSVSAGQQGLEKGRMVFFEGVKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGTVVAVKRLKEIQIGGKREFEQRMEMLGRLRNPNIVSLRAYYFARDEKLLVCDYMPNGSLFWLLHVNRNPIHVGYLDPIAVFLLGSTIHFDNLKLDHVIMNGNRGPGRTPLDWTTRLKIAAGAARGVAFIHNSCKSHNHNNNITHGNIKSTNILVDVAGNARVADFGLSIFAGPSNGRSNGYRAPEASDGRKQSQKADVYSFGVLLMEMLTGKCPSAVDGGGTAVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVALLQIAMACTTTAPDQRPRMSHVVKMIEELRGVEVSPCHDTLDSVSQSPSVSEDARGGGASVSTD. 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01115 698 Gene3D Ribonuclease Inhibitor 28 178 IPR032675 -
Seca9g01115 698 Gene3D Ribonuclease Inhibitor 179 224 IPR032675 -
Seca9g01115 698 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Seca9g01115 698 FunFam Nuclear pore complex protein NUP107 26 177 - -
Seca9g01115 698 MobiDBLite consensus disorder prediction 673 698 - -
Seca9g01115 698 MobiDBLite consensus disorder prediction 237 261 - -
Seca9g01115 698 SUPERFAMILY Protein kinase-like (PK-like) 357 660 IPR011009 -
Seca9g01115 698 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Seca9g01115 698 MobiDBLite consensus disorder prediction 237 252 - -
Seca9g01115 698 ProSiteProfiles Protein kinase domain profile. 353 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01115 698 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 465 670 - -
Seca9g01115 698 Gene3D Phosphorylase Kinase; domain 1 322 428 - -
Seca9g01115 698 Gene3D Transferase(Phosphotransferase) domain 1 465 677 - -
Seca9g01115 698 CDD STKc_IRAK 359 663 - -
Seca9g01115 698 MobiDBLite consensus disorder prediction 671 698 - -
Seca9g01115 698 SUPERFAMILY L domain-like 45 205 - -
Seca9g01115 698 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 665 IPR046959 -
Seca9g01115 698 Pfam Protein tyrosine and serine/threonine kinase 357 659 IPR001245 GO:0004672|GO:0006468
Seca9g01115 698 FunFam pollen receptor-like kinase 1 323 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01115 Seca-Chr9 20541634 20544594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01115 28 694 Receptor kinase-like Gene Family AT1G68400 60.926 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca9g01115 PK_Tyr_Ser-Thr 3.7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01115 - - cam:105851082 852.818