Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01113 ATGGTTACAATACTTGTGGTCTTGAGATGTTGTTTTAGAAGAAAGGTCACCCCTGCATCTATTTTCTTTTGGAAGGGTGAAAACCCAATCCATCAAAAGATAGATATTTTTTTAAAGAATCACGAATTCCTTCAAACCAAAAGGTACACTTACTCTCAGATCAGAGAAATGACCAACTCCTTCAAAAACAAACTAGGCCAAGGTGGATATGGAAGTGTGTACAAAGGAAAGTTGCCTGATGGACGACTTGTTGCAGTTAAGGTTTTAAACAAGTTGAAAGGAAATGGTGAAGAATTCATCAATGAAGTAGCTACTATCAGCCAAACTTCTCATGTTAATGTAGTTAGTCTCTTTGGATTCTGTTTTCAAGGTTCAAAAAGAGCTCTAGTTTATGAATTCATGCCTAATGGATCTCTTGAAAAGTTTATATATGAAGATAATGCTGCAATGGTTGACCGTCAATTGGATTGCAAAACTCTGCATGATATTGCAATTGGTACTGCAAGAGGTTTAGAGTACTTGCATAGAGGTTGCAACACTCGGATCTTGCATTTTGACATCAAGCCTCACAATATATTGCTTGATGTGGATTTCTGTCCAAAGATTTCTGATTTTGGGCTAGCAAAAATATGCCCAAGAAAGGAGAGTATTGTATCCATGTTGGGTGCCAGAGGAACTGCAGGGTATATTGCTCCTGAGGTGTTTTCCAGAAATTTTGGTGGTGTATCTCATAAGTCAGATGTCTATAGTTTTGGAATGATGGTCTTAGAAATGGTTGCTCGGCCAGCAATGAGTAAAGTGGTAGAAATGTTGGAAGGAAGCCTTGAGTCATTGCAAATACCACCCAAGACCTGTGGTAATGGCCAAAACATAAGCTACCCATTTTACATCCAAGGGACACAAGAACCCTTTTGTGGGAATCCTGGTTTTGAGCTCAGTTGTGGCAAGAATGGCTTCCCAATTCTCAATCTTATCAATACCAACTACACAATTCATCAAATTTTCTACAACAACAACACACTCCGAGTGTCCAACCCCGTTTTTTCACAATCAAACACCACTGCATGTATTGCTCCCACACAGAACATCACAGTTGGCGAGTACAGGTTCCGATTTGCTCCCAACCAAAGGGATCTATTGTTGTTCTACGGCTGCGACATAACATCGGCTGGTGAAGAGATGCAAGAGCACAGGATTGGGTGTTCTACAGAAAACCGTACGAGTTCAGTTGTGGCCTTTTATAGGGAGGATCAGAATTTGAGCTTAATGAGGGAGAATTGCAAGGGTAGTAGGTTAGTGAATACAGTAGTAGAAGATGGGAAAGGAGGGATTCAAGAGGCACTGAAAAAAGGGTTTATATTGAATTGGAATGCTTCTAACTGCAGCGAGTGCACCAACAGTGGAGGGAGGTGCGGGTTCGACCTTGACCCTGATACATATGCGTTCAGGTGCTACTGTCCTGACAGGGTTCATGCTGTGAAATGTGGTTCAACAATTACAGTTTGTGCAGCTTTAGGAGTTGCACTTTTAATGATCGTAATCTACTACTTTAGAGGGAGATTATGGAAAGAAGAATGTAAAGCTCATCAAGAATTTGAGGCTTTTCTCAGGAATCATGGACCGCTTGCTGTGAGAAGATATAGTTACTTGGACATAAAGAAAATGACCAGTTCCTTTGTAGAAAAATTAGGCCAAGGAGGATATGGAGTTGTTTATAAAGGGAAGTTGCATGATGAAAGTATAGTTGCTGTGAAGGTATTGAATAACTTAAAAGGTAATGGGGAGGAATTCATCAATGAGGTAGCAAGCATTAGTAGAACTTCTCATGTTAATATTATCACTCTATTAGGATTTTGTTTTGAAGGATCTAAGAGAGCATTGGTCTATGAGTTCATGTCTAATGGATCTTTGGAGAAGTTCATATATGGAAATAATCCAATGGAAAAAGATAACCAATTGAATTGTGAAACATTATACCAAATTGCAATAGGTGTTGCTCAAGGATTGGAATATTTGCACAGAGGATGTAATACTCGAATCTTCCATTTTGACATGAAGCCTCATAACATATTGTTGGATGAGAACTTCTATCCCAAGATCTCAGATTTTGGACTCGCTAAAATATGTCCTAAAAATGAGAGCAAGGTATCCATGTTTGGAGCTAGAGGAACCCCAGGATACATTGCTCCTGAGGTATTTTCAAGAAATTTTGGAATGGTCTCTCACAAGTCAGATGTTTATAGCTTTGGAATGATGGTTTTAGAAATGGTGGGGGGAAGACAAAATATTAATATTGATGTTGATTGTACTAGTGAAATTTATTTTCCTTATTGGATTTATAAGCGTATAGAAGCAAATGAAGAGCTTGCACTTAGAAACATTACCAATGAAAGTGACAGAGAAAGGATGAGAAAGATGGTCATAGTAAGCTTGTGGTGCATCCAAACTAATCAATCAGACCGTCCAACAATGCGTACAGTGGTGGAGATGCTTGAAGGGAGAATTGAGAACTTGACAATGCCACCAAAACCGTTCCTGTCATCTCCTTCAGGTTCTATGCGCCATTCTTCAACAGATTGA 2580 0.3926 MVTILVVLRCCFRRKVTPASIFFWKGENPIHQKIDIFLKNHEFLQTKRYTYSQIREMTNSFKNKLGQGGYGSVYKGKLPDGRLVAVKVLNKLKGNGEEFINEVATISQTSHVNVVSLFGFCFQGSKRALVYEFMPNGSLEKFIYEDNAAMVDRQLDCKTLHDIAIGTARGLEYLHRGCNTRILHFDIKPHNILLDVDFCPKISDFGLAKICPRKESIVSMLGARGTAGYIAPEVFSRNFGGVSHKSDVYSFGMMVLEMVARPAMSKVVEMLEGSLESLQIPPKTCGNGQNISYPFYIQGTQEPFCGNPGFELSCGKNGFPILNLINTNYTIHQIFYNNNTLRVSNPVFSQSNTTACIAPTQNITVGEYRFRFAPNQRDLLLFYGCDITSAGEEMQEHRIGCSTENRTSSVVAFYREDQNLSLMRENCKGSRLVNTVVEDGKGGIQEALKKGFILNWNASNCSECTNSGGRCGFDLDPDTYAFRCYCPDRVHAVKCGSTITVCAALGVALLMIVIYYFRGRLWKEECKAHQEFEAFLRNHGPLAVRRYSYLDIKKMTSSFVEKLGQGGYGVVYKGKLHDESIVAVKVLNNLKGNGEEFINEVASISRTSHVNIITLLGFCFEGSKRALVYEFMSNGSLEKFIYGNNPMEKDNQLNCETLYQIAIGVAQGLEYLHRGCNTRIFHFDMKPHNILLDENFYPKISDFGLAKICPKNESKVSMFGARGTPGYIAPEVFSRNFGMVSHKSDVYSFGMMVLEMVGGRQNINIDVDCTSEIYFPYWIYKRIEANEELALRNITNESDRERMRKMVIVSLWCIQTNQSDRPTMRTVVEMLEGRIENLTMPPKPFLSSPSGSMRHSSTD. 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01113 859 ProSitePatterns Protein kinases ATP-binding region signature. 65 87 IPR017441 GO:0005524
Seca9g01113 859 SUPERFAMILY Protein kinase-like (PK-like) 541 832 IPR011009 -
Seca9g01113 859 ProSiteProfiles Protein kinase domain profile. 557 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01113 859 FunFam PR5-like receptor kinase 632 843 - -
Seca9g01113 859 Pfam Wall-associated receptor kinase galacturonan-binding 283 344 IPR025287 GO:0030247
Seca9g01113 859 Pfam Protein kinase domain 62 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01113 859 Pfam Protein kinase domain 560 829 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01113 859 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 134 276 - -
Seca9g01113 859 Gene3D Phosphorylase Kinase; domain 1 533 631 - -
Seca9g01113 859 Gene3D Phosphorylase Kinase; domain 1 35 133 - -
Seca9g01113 859 Gene3D Transferase(Phosphotransferase) domain 1 134 281 - -
Seca9g01113 859 Gene3D Transferase(Phosphotransferase) domain 1 632 840 - -
Seca9g01113 859 ProSitePatterns Serine/Threonine protein kinases active-site signature. 680 692 IPR008271 GO:0004672|GO:0006468
Seca9g01113 859 SMART serkin_6 59 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01113 859 SMART serkin_6 557 831 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01113 859 FunFam serine/threonine-protein kinase PBS1-like 32 133 - -
Seca9g01113 859 Pfam Wall-associated receptor kinase C-terminal 409 488 IPR032872 -
Seca9g01113 859 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Seca9g01113 859 PANTHER RUST RESISTANCE KINASE LR10-RELATED 527 848 IPR045874 GO:0004672
Seca9g01113 859 ProSitePatterns Protein kinases ATP-binding region signature. 563 585 IPR017441 GO:0005524
Seca9g01113 859 FunFam S-receptor-like serine/threonine-protein kinase 526 631 - -
Seca9g01113 859 ProSiteProfiles Protein kinase domain profile. 59 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01113 859 SUPERFAMILY Protein kinase-like (PK-like) 41 261 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01113 Seca-Chr9 20509764 20519661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01113 281 844 Receptor kinase-like Gene Family AT5G38260 39.456 3.11e-127 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca9g01113 Pkinase 5.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01113 - - lang:109359375 801.201