Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01107 ATGTCAAAGGTCCCATGTCTATCGTCATACTTGTTACATTTTAATAATATTCTTCTTCTTCTCCTCCTCCTCCTTCTCTGCTTCCATCTCTCCTTCATCTTAGAAATCCTAAATGAAATGAACCCAATAACCCTCTTTTCCACCCTGCTCAAACCCTTCTGTTCTCCTCTTCTACAATCTTACATCATTTTCTTCTCTCTTCTAACCACACTCACTCTGTCTTCTGTGGATCCAAAGTTCCAAGCTTGCGAGCCCAAGACCTGTGGCAATGGCCAAAACATAAGCTACCCATTTTACATCCTAGGGAAACAAGAACCGTTTTGTGGGAATCCTGGTTTTGAGCTCAGTTGTGGCAAGAATGGCTTCCCAATTCTCAATCTTATCAATACCAACTACACAATTCATCAAATTTTCTACAACAACCACACACTCCGACTGTCCAACCCCGTTTTTTCAGAATCAAACACCACTGCATGTATTGCTCCCACACAGAACATCACAGTTGGCAAGTACAGGTTCCGATTTGCTCCCAATCAAAGGGATCTATTGTTGTTCTACGGCTGTGACTTAACATCGGCTGGTGAAGAGATGCAAGAGCACAGGATTGGGTGTTCTACAGAAAACCGTACGAGTTCAGCTGTGGCCTTTTATAGGGAGGATCAGAATTTGAGCTTAGTGAGGGAGAATTGCAAGGGTAGTAGGTTAGTGAATGCAGTAGTAGAAGATGGGAAAGGAGGGATTCAAGAGGCACTGAAGAAAGGGTTTATATTGAATTGGAATGCTTCTAACTGCAGCGAATGCACCAACAGTGGAGGGAGGTGCGGGTTCGACCTTGACCCTGATACATATGCGTTCAGGTGCTACTGTCCTGACAGGGTTCATGCTGTGAAATGTGGTTCAACTGCAGAGGCAAAGTTGAGTAAGACAGGGAAACTGAGCATAGGTTTAGGTGTTGGACTCACAACCATCTTGATAATTGGGTTGCTCCTTCTGCTTTACAAAATAAAACACAGTTCCTCAGATAGTGGATTCCAAACAAGAAATACTAACCCTTCAAATCCAGATGTAGAAAATGCCATGGCGTACTTTAAAGTTCCCGTCTTCTCATACAAGGAGCTTGAAGAAGCAACAAACCATTTTGACCATTATAGACAAATTGGAGATGGAGGCTTTGGAACTGTCTACTATGGGAAACTCCGAGATGGAAGGGAAGTTGCTGTCAAACACATGTATGAGCACAACTACAGGCGAGTAGAACAGTTCCTGAATGAAGTTAAGATCCTCACACGTTTGCGCCATAAAAATCTTGTGCAACTCTATGGCTGCACTTCACGAGATAGCCGTGATCTGCTGCTTGTGTATGAATATATTCCAAATGGGACTGTTGCTTGTCATCTACATGGAGAATTGGCAAAGCCTGGCTTACTACCATGGTCTATACGACTTAAAATTGCCATAGAGACTGCTAGTGCATTGGCTTATCTTCATGCCTCTGACATTATCCACCGTGATGTGAAAACAAACAACATTCTCCTTGACAACGGTTTTTGTGTTAAAGTTGCAGATTTTGGCCTTTCAAGACTATTCCCCAGTGATGTCACTCATGTGTCCACAGCACCACAGGGGACCCCAGGTTATGTTGACCCTGAATATTACCAATGCTACCAGCTTACTAGCAAGAGTGATGTATATAGCTTTGGAGTTGTGCTCATTGAGTTAATATCATCTAAGCCAGCTGTTGATATAAACAGGCATAAGGATGAAATCAACTTGTCAAATCTAGCCATAAAGAAGATTCAAGAAAGTGCATTAAGTGAGCTGGTTGATCCTTCTCTTGGTTTTGATTCAGATAATGAGGTTCAGAGGATGATAGTTTCAGTAGCTGAATTGGCTTTTCAATGTTTGCAACGGGACAAGGAATTGAGGCCTTCCATGGATGAAGCATTTGAGGTGCTGAGGAGAATTGAAAATGCGAAGGATGATGAGCCAAGACATCTAGAACTAGAAGAATCTTCTGGGGTTTCACTTGGTAATGTAAAACCATCATTGCCAATCTCACTAGAATGGGATGATGTTGGATTATTGAAGAATATGAAGCCACCTAATTCTTCACCAATATCAGTTACTGATAACTGGGAAAGTAAATCTACTACGCCTAATGTCAGTAGTTAA 2172 0.4213 MSKVPCLSSYLLHFNNILLLLLLLLLCFHLSFILEILNEMNPITLFSTLLKPFCSPLLQSYIIFFSLLTTLTLSSVDPKFQACEPKTCGNGQNISYPFYILGKQEPFCGNPGFELSCGKNGFPILNLINTNYTIHQIFYNNHTLRLSNPVFSESNTTACIAPTQNITVGKYRFRFAPNQRDLLLFYGCDLTSAGEEMQEHRIGCSTENRTSSAVAFYREDQNLSLVRENCKGSRLVNAVVEDGKGGIQEALKKGFILNWNASNCSECTNSGGRCGFDLDPDTYAFRCYCPDRVHAVKCGSTAEAKLSKTGKLSIGLGVGLTTILIIGLLLLLYKIKHSSSDSGFQTRNTNPSNPDVENAMAYFKVPVFSYKELEEATNHFDHYRQIGDGGFGTVYYGKLRDGREVAVKHMYEHNYRRVEQFLNEVKILTRLRHKNLVQLYGCTSRDSRDLLLVYEYIPNGTVACHLHGELAKPGLLPWSIRLKIAIETASALAYLHASDIIHRDVKTNNILLDNGFCVKVADFGLSRLFPSDVTHVSTAPQGTPGYVDPEYYQCYQLTSKSDVYSFGVVLIELISSKPAVDINRHKDEINLSNLAIKKIQESALSELVDPSLGFDSDNEVQRMIVSVAELAFQCLQRDKELRPSMDEAFEVLRRIENAKDDEPRHLELEESSGVSLGNVKPSLPISLEWDDVGLLKNMKPPNSSPISVTDNWESKSTTPNVSS. 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01107 723 Pfam Wall-associated receptor kinase galacturonan-binding 83 147 IPR025287 GO:0030247
Seca9g01107 723 Gene3D Phosphorylase Kinase; domain 1 351 456 - -
Seca9g01107 723 Pfam Protein kinase domain 382 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01107 723 MobiDBLite consensus disorder prediction 700 723 - -
Seca9g01107 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
Seca9g01107 723 ProSiteProfiles Protein kinase domain profile. 380 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01107 723 ProSitePatterns Protein kinases ATP-binding region signature. 386 408 IPR017441 GO:0005524
Seca9g01107 723 Pfam Wall-associated receptor kinase C-terminal 222 291 IPR032872 -
Seca9g01107 723 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 352 456 - -
Seca9g01107 723 SUPERFAMILY Protein kinase-like (PK-like) 364 655 IPR011009 -
Seca9g01107 723 Gene3D Transferase(Phosphotransferase) domain 1 457 666 - -
Seca9g01107 723 MobiDBLite consensus disorder prediction 694 723 - -
Seca9g01107 723 CDD STKc_IRAK 386 655 - -
Seca9g01107 723 FunFam Wall-associated receptor kinase-like 20 457 665 - -
Seca9g01107 723 SMART serkin_6 380 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01107 723 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 60 717 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01107 Seca-Chr9 20453206 20459311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01107 263 723 Receptor kinase-like Gene Family AT1G25390 57.940 6.78e-174 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca9g01107 Pkinase 2.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01107 - - aip:107643858 917.531