Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01098 ATGTTCCCTTTAGTTTTGTTGCTTTTTCTTCTCTGCAACTCTCTTGTTGCACGTGTGAGCTCTATCAACAGTGAAGGCTCTGCGCTTTTGACACTGAAGGAGTCCATCATCACAGACCCAGAAGGGTTTATGACTAACTGGAACTCTTCTGATGACAACCCATGTTTGTGGAATGGGATCGCATGCAAGGATCAAAGTGTTGTCTCCATTAGTATCCCAAAAAGGAAACTTTATGGGTTTCTTCCTTCTGGGCTAGGATCTCTGTCCCAGCTTCGCCATGTGAATTTGAGGAACAATAAGCTCTTTGGGAGCTTGCCTTTTGAGCTCTTTGAAGCTCAGGGACTGCAAAATTTGGTGCTTCATGGCAATTCCTTTTCTGGGTCTGTTCCAAATGAGATTGGGAACCTCAGGTACCTTCAAACTCTAGATTTATCACAAAATTTCTTCAATGGGTCTTTACCTGCCACAATACTCCAATGCAAAAGGCTCAGAACAGTTGTTCTTAGTCATAATAACTTCACCGGTCCTCTGCCAGATGGATTTGGTGGTAATTTGTCTTCTTTGGAAAAACTAGACCTTTCTTTCAATCAATTCAATGGTTCAATTCCTAGTGATATGGGAAAACTATCAAGCCTGCAAGGAACTGTTGATTTGTCTCATAATCATTTTAGTGGTTCAATCCCAGCCACCCTTGGTAATCTTCCTGAGAAGGTTTACATTGATCTTTCTTACAATAACTTAAGTGGTCCAATACCCCAAACTGGTGCATTAATTAATAGAGGACCAACAGCTTTTATTGGCAATTCTGATCTATGTGGCCCCCCTTTGAAGAATCTATGTGCTAATTCACCTTCCTCACTTCCATCTTTGCCTGATAATAACACATCTCAGGATAGGGATAATGGTTTTGGGAAAAGTGGGAAAAGCAAAGGGCTGAGTAAAGGTGCTGTGGCTGGCATTGTTGTGGGAGATGTAATTGGAATTTGCCTTATAGGTTTGCTATTCTCTTATTTCTACTCAAGGGTTTGTGGTTTTAATCAGGAGCAGGATGAAAATGGTTTTGACAAGGGTGGGAGAGAGAGGAAGGAGTGTTTATGCTTCAGAAAGGATGAGTCTGAGACACTATCTGATCATGTTGAGCAATATGATCTTGTCCCATTAGATGCTAGAGTGGCCTTTGATTTGGATGAGCTTCTTAAAGCTTCAGCTTTTGTTTTGGGAAAGAGTGGAATAGGGATTGTCTACAAAGTGGTGCTTGAAGATGGCCTCACCTTGGCTGTGAGAAGATTGGGAGAGGGAGGTTCTCAAAGGTTTAAAGAGTTTCAAACAGAAGTTGAAGCAATAGGAAAGTTAAGGCATCCAAATATTGTTACTCTGAGAGCCTATTACTGGTCTGTTGATGAGAAGCTTCTCATCTATGATTATATTCCCAATGGAAGCCTTGCTGCAGCAATTCATGGTAAGTTTCATTAA 1473 0.4121 MFPLVLLLFLLCNSLVARVSSINSEGSALLTLKESIITDPEGFMTNWNSSDDNPCLWNGIACKDQSVVSISIPKRKLYGFLPSGLGSLSQLRHVNLRNNKLFGSLPFELFEAQGLQNLVLHGNSFSGSVPNEIGNLRYLQTLDLSQNFFNGSLPATILQCKRLRTVVLSHNNFTGPLPDGFGGNLSSLEKLDLSFNQFNGSIPSDMGKLSSLQGTVDLSHNHFSGSIPATLGNLPEKVYIDLSYNNLSGPIPQTGALINRGPTAFIGNSDLCGPPLKNLCANSPSSLPSLPDNNTSQDRDNGFGKSGKSKGLSKGAVAGIVVGDVIGICLIGLLFSYFYSRVCGFNQEQDENGFDKGGRERKECLCFRKDESETLSDHVEQYDLVPLDARVAFDLDELLKASAFVLGKSGIGIVYKVVLEDGLTLAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIVTLRAYYWSVDEKLLIYDYIPNGSLAAAIHGKFH. 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01098 490 ProSiteProfiles Protein kinase domain profile. 400 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01098 490 FunFam Leucine-rich repeat receptor-like protein kinase 383 475 - -
Seca9g01098 490 Gene3D Phosphorylase Kinase; domain 1 370 475 - -
Seca9g01098 490 PANTHER OS05G0588300 PROTEIN 159 486 - -
Seca9g01098 490 FunFam Leucine-rich repeat receptor-like protein kinase 187 282 - -
Seca9g01098 490 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Seca9g01098 490 SMART LRR_typ_2 136 160 IPR003591 -
Seca9g01098 490 SMART LRR_typ_2 88 112 IPR003591 -
Seca9g01098 490 SMART LRR_typ_2 185 209 IPR003591 -
Seca9g01098 490 Gene3D Ribonuclease Inhibitor 78 283 IPR032675 -
Seca9g01098 490 FunFam Leucine-rich repeat receptor-like protein kinase 22 179 - -
Seca9g01098 490 SUPERFAMILY L domain-like 24 277 - -
Seca9g01098 490 Gene3D Ribonuclease Inhibitor 18 77 IPR032675 -
Seca9g01098 490 MobiDBLite consensus disorder prediction 283 311 - -
Seca9g01098 490 Pfam Protein tyrosine and serine/threonine kinase 406 486 IPR001245 GO:0004672|GO:0006468
Seca9g01098 490 Pfam Leucine Rich Repeat 139 158 IPR001611 GO:0005515
Seca9g01098 490 Pfam Leucine rich repeat 162 223 IPR001611 GO:0005515
Seca9g01098 490 SUPERFAMILY Protein kinase-like (PK-like) 405 487 IPR011009 -
Seca9g01098 490 MobiDBLite consensus disorder prediction 283 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01098 Seca-Chr9 20384116 20385588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01098 4 488 Receptor kinase-like Gene Family AT2G01210 67.821 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca9g01098 PK_Tyr_Ser-Thr 1.1e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01098 - - gmx:100810225 790.415