Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01094 ATGATTCGCAACAATGAAGGTCAGTTCAAACTTGTCATGGCTCAAGTCAACATGCCTGGCATAGATCCCATTTCTTTTATGAATGAATTGCAGGCGAAAGACATTCCCATCATATTCATCACCTCTGGAAGATTTGATGATGAAACTTGGGAAGCATTAGCTAAAGGATCTTGTTATTTCCTTGAGGAACCAATCTATTTGAAGGATCTCAAATATTTGTGGGCTTGTGGAGCAAATGTAGAAGGGAATGATCATTATACTGAAAGCAAGAAAAGCAAGAAAAGTGAAGAACTCGAGCCAGCCCCGATGAACATTGACAACAATGACCATACTGATGTTGCTGAGGAGGCAGAGGCTACAACAGAACAACAAACTGAGAAAAAGCGTATTGTTTGGACTCCAGAGCTGCATCAAAAGTTTACAGAAGCCATAGCTCTGCTAGGAAACTTTAAAGTTCGTCCGAAAGCGATACTACGTTTAATGAATGTGCCTGACTTAACAACACGTCAGGTGTCCAGTCATCTCCAGAAATACAAATGTCAACTGAAGCAAATCCAGGATTACAGCAATTATGATTTGCATGTAATGAGTACTACAATGCCAAACTTCAGTGCCAATGCCATGACCATGTATCCCTCTCCATACCAGAGCCAAAGTTACCCAGGTCTCCCTGCATCAACTGCTTTCTTGGGTGTGAACCAAATGCAAAACCAGTTTCTGATGAACCCTGCTGAAAATCAAGAATTGGATGTTCAAGATCTGCTGAAAAATGAAGGCAATCCATCCTTCACATATGAATTTCCAACAGGAGCGGCCATCAATGAAAGCCAAAGTCTAGGTTCTCTAGTGGGAAACCCTATGCTAGAGGCTTCAACAGATCAAAATGAATTTGATCTTGAAATTCTTGAGGAACACACTTATGATATTTTTGAAAATGGAATAATTCCTGATGATGTTGATGAACACAATGAGATCTTAAAGATGGTTCCTGATAGCAACCCCAATCAGTCCCCTGGAGTTTGA 1023 0.4057 MIRNNEGQFKLVMAQVNMPGIDPISFMNELQAKDIPIIFITSGRFDDETWEALAKGSCYFLEEPIYLKDLKYLWACGANVEGNDHYTESKKSKKSEELEPAPMNIDNNDHTDVAEEAEATTEQQTEKKRIVWTPELHQKFTEAIALLGNFKVRPKAILRLMNVPDLTTRQVSSHLQKYKCQLKQIQDYSNYDLHVMSTTMPNFSANAMTMYPSPYQSQSYPGLPASTAFLGVNQMQNQFLMNPAENQELDVQDLLKNEGNPSFTYEFPTGAAINESQSLGSLVGNPMLEASTDQNEFDLEILEEHTYDIFENGIIPDDVDEHNEILKMVPDSNPNQSPGV. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01094 340 FunFam Two-component response regulator 123 186 - -
Seca9g01094 340 Pfam Myb-like DNA-binding domain 132 179 IPR001005 -
Seca9g01094 340 SUPERFAMILY Homeodomain-like 125 184 IPR009057 -
Seca9g01094 340 NCBIfam myb-like DNA-binding domain, SHAQKYF class 127 179 IPR006447 GO:0003677
Seca9g01094 340 Gene3D - 124 186 - -
Seca9g01094 340 SUPERFAMILY CheY-like 6 74 IPR011006 -
Seca9g01094 340 MobiDBLite consensus disorder prediction 84 100 - -
Seca9g01094 340 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 97 244 IPR044841 GO:0003700|GO:0006355
Seca9g01094 340 MobiDBLite consensus disorder prediction 84 110 - -
Seca9g01094 340 Gene3D - 1 74 - -
Seca9g01094 340 ProSiteProfiles Response regulatory domain profile. 1 78 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01094 Seca-Chr9 20320781 20327906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01094 1 229 Response Regulator Gene Family AT2G25180 27.530 4.51e-24 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca9g01094 Myb_DNA-binding 4.1e-07 CL0123