Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01090 ATGGACATGGATGTTTGCCGGAATGTATCACTTTCCGGTGAGTGTCAGCAACAACTTTCTACCCTTGATGACCTTTTCTCTGCCCAGAACACGCAGGAAGTGGATTTTGGCATGGAATGGCTATCAGTGTTTGTGGAAGATTGTTTTTCCAGTAAGCCAAGTTGTCTCTTGGCCCCTGCATCTGCTGGTGTTGAAAATAAAAGTACCACAAACACCAGAGCTTCAAGCACAATACAGAGACCCATGCAAAATCATTCTTCTTTGCAAAATTTTGCTGTGCCTGGGAAGGCTAGAAGCAAAAGGAAAAGGCTTTCAGCTCCTAGAACAAGAGACACTTTAAGCACTTGGTCACCCCATATATTAGGCACACAGAGTGATGGCTTGAGTTCAGACCCTCCTCTGCTGAAACAGGCTTATTGGTTAGCTGATAGTGAACTCATTGTCCCTAAAAAGAATGATGAGCAAGAAAGGGTAGCCAAAAGTGGGGAAGTGGAGAAGGAGAACTTGGGGGATTCTGAACTTGAAATTAACAACAATGGGCAGCATCCAATTCCAAGGAGGTGCACCCATTGTTTGGCTCAGAGGACCCCACAATGGAGAGCTGGACCATTGGGTCCAAAGACACTATGTAATGCATGTGGGGTGAGGTACAAGTCTGGTAGGTTGTTGCCAGAGTATAGGCCAGCCAAGAGTCCTACTTTTGTAAGCTACTTGCATTCTAATTCCCACAAGAAAGTTATGGAGATGAGAATGGCTGTTCTATCTCCCGATGAGCAGTAG 780 0.4538 MDMDVCRNVSLSGECQQQLSTLDDLFSAQNTQEVDFGMEWLSVFVEDCFSSKPSCLLAPASAGVENKSTTNTRASSTIQRPMQNHSSLQNFAVPGKARSKRKRLSAPRTRDTLSTWSPHILGTQSDGLSSDPPLLKQAYWLADSELIVPKKNDEQERVAKSGEVEKENLGDSELEINNNGQHPIPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVLSPDEQ. 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01090 259 ProSitePatterns GATA-type zinc finger domain. 188 213 IPR000679 GO:0006355|GO:0043565
Seca9g01090 259 Gene3D - 178 250 IPR013088 GO:0006355|GO:0008270
Seca9g01090 259 MobiDBLite consensus disorder prediction 67 93 - -
Seca9g01090 259 ProSiteProfiles GATA-type zinc finger domain profile. 186 218 IPR000679 GO:0006355|GO:0043565
Seca9g01090 259 MobiDBLite consensus disorder prediction 67 118 - -
Seca9g01090 259 SMART GATA_3 182 236 IPR000679 GO:0006355|GO:0043565
Seca9g01090 259 FunFam GATA transcription factor 177 258 - -
Seca9g01090 259 Pfam GATA zinc finger 188 222 IPR000679 GO:0006355|GO:0043565
Seca9g01090 259 CDD ZnF_GATA 187 234 IPR000679 GO:0006355|GO:0043565
Seca9g01090 259 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 184 246 - -
Seca9g01090 259 PANTHER GATA TRANSCRIPTION FACTOR 22 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01090 Seca-Chr9 20274165 20275877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01090 38 250 C2C2-Gata Transcription Factor Family AT4G32890 44.954 3.87e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca9g01090 GATA 1.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01090 - - gmx:100776805 376.326