Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01065 ATGGATATTCAATTTCAGAAACCAAAGAAGCATTTAAGACCAAGCATATCAAAAGAAGGCAAATTCAAAGGGAGAAACAGAAACAACAACACAAACAAGTTTGTTGGGGTGAGACAAAGACCTTCAGGAAGATGGGTTGCTGAGATAAAGGACACAACACAGAAGATAAGAATGTGGCTTGGCACATTTGAGACTGCAGAGGAAGCAGCCAGAGCTTATGATGAAGCTGCATGTCTTCTTCGTGGATCAAACACTAAAACAAACTTCATCACTCATGTTTCCTTGGATTCTCCTCTTGCTTCTCGGATTAGAAATCTTCTTAACAACAGAAAAGGTACCACCAAACAACAGGAACATGCAGAGGATGCATCATCTGTCACAAGAGTTAGCAGCATCACTAGCAGTGATAGCACAAGTAGCAGCAGTACTAATTCAAGCAATGAAATCAGTGAAAACTCACTTTCTACACCAAACACAAAACTATTTGATGATGCTTATAGACCTGATTTGAGCAATTTCATGGAGAAGTCTGAGTCAGGTTCTCAGTCCAATCTTTCATGGGGTTCTGAACCTGTTTTTGATGGTTTTCCTTTTGGTCAAGTGTTGGATATACCTAACCCTGATGGCCTGTCTGATATGGCTGATTTGGAGCTTTCAGAATTTGAAAGGATGAAAGTTGAGAGACAAATATCAGCTTCACTTTATGCAATTAATGGTGTGCAAGAGTATATGGAAACTGTTCAGGACTCTAATGAAGCACTCTGGGATCTTCCATCTCTGTCCTCATTTTTCTGTTAA 798 0.3972 MDIQFQKPKKHLRPSISKEGKFKGRNRNNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTKTNFITHVSLDSPLASRIRNLLNNRKGTTKQQEHAEDASSVTRVSSITSSDSTSSSSTNSSNEISENSLSTPNTKLFDDAYRPDLSNFMEKSESGSQSNLSWGSEPVFDGFPFGQVLDIPNPDGLSDMADLELSEFERMKVERQISASLYAINGVQEYMETVQDSNEALWDLPSLSSFFC. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01065 265 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Seca9g01065 265 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Seca9g01065 265 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Seca9g01065 265 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Seca9g01065 265 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
Seca9g01065 265 MobiDBLite consensus disorder prediction 123 160 - -
Seca9g01065 265 Pfam AP2 domain 33 82 IPR001471 GO:0003700|GO:0006355
Seca9g01065 265 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 231 - -
Seca9g01065 265 MobiDBLite consensus disorder prediction 1 26 - -
Seca9g01065 265 MobiDBLite consensus disorder prediction 109 161 - -
Seca9g01065 265 CDD AP2 33 89 IPR001471 GO:0003700|GO:0006355
Seca9g01065 265 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Seca9g01065 265 FunFam ethylene-responsive transcription factor RAP2-11 32 91 - -
Seca9g01065 265 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01065 Seca-Chr9 20056210 20057007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01065 21 265 AP2-EREBP Transcription Factor Family AT5G19790 45.349 2.19e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca9g01065 AP2 5.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01065 K09286 - gmx:100796898 346.665