Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01064 ATGAATGGAGGAGACCTGGGTTTGGACAGTTTCTTCAAAAAGGTTCAAGAGCTTGATAAACAGTATGCAAAGCTGGATAATCTTTTGAGAAAGCTCCAGGATGCCCACGAGGAGTCCAAATCTGTGACCAAGGCTCCTGCTATGAAGGGTATAAAACAAAGAATGGAGAAAGATGTTGATGAAGTTAAGAAAACTGCACATTACTTAAAGACCAAAATTGAAGAACTCGACAAAGAGAATTTGGCAAATAGGCAGAAGCCTGGGTGTGGAAAAGGATCAGCTGCTGACCGGTCAAGAACAGCAACAACCCTTTCCTTAAAAAAGAAACTGAAGGACAAGATGGCTGAATTTCAGAACCTGAGAGAATCCATCCATCAAGAATATCGTGAGGTTGTTGAGAGACGTGTCTTTACAGTGACGGGCACAAGAGCTGATGAGGAGACAATTGACAGATTAATTGAGACTGGAGATAGTGAACAAATTTTCCAGAAAGCTATTCAGGAACAGGGACGAGGCCAGATAATGGACACACTAGCAGAAATTCATGAGCGACATGAAGCAGTTAGAGACATGGAGAGAAAGCTTCTTGATTTACAACAGATTTTTATGGATATTGCGGTGTTAGTTGATGCACAAGGAGAAATGCTTGACAACATAGAAACACAGGTTTCAAGTGCAGTAGATCACGTGCAGCAAGGCAATAATGCCCTTCAGAAGGCAAAGAAACTGCAAAGGAACTCTAGAAAATGGATGTGCATTGCAATCATAATACTCCTCATAGTTGTTATAATCATCGTTGTTGCTGTCATCAAACCATGGGTTAGCAAAAGGGGTGCTTAG 840 0.4143 MNGGDLGLDSFFKKVQELDKQYAKLDNLLRKLQDAHEESKSVTKAPAMKGIKQRMEKDVDEVKKTAHYLKTKIEELDKENLANRQKPGCGKGSAADRSRTATTLSLKKKLKDKMAEFQNLRESIHQEYREVVERRVFTVTGTRADEETIDRLIETGDSEQIFQKAIQEQGRGQIMDTLAEIHERHEAVRDMERKLLDLQQIFMDIAVLVDAQGEMLDNIETQVSSAVDHVQQGNNALQKAKKLQRNSRKWMCIAIIILLIVVIIIVVAVIKPWVSKRGA. 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01064 279 SUPERFAMILY t-snare proteins 6 233 IPR010989 GO:0016020|GO:0016192
Seca9g01064 279 Pfam Syntaxin 10 213 IPR006011 GO:0016020
Seca9g01064 279 FunFam Syntaxin 132 3 132 - -
Seca9g01064 279 FunFam Syntaxin 132 171 271 - -
Seca9g01064 279 Gene3D - 5 132 - -
Seca9g01064 279 Pfam SNARE domain 214 266 IPR000727 -
Seca9g01064 279 SMART SynN_4 3 129 IPR006011 GO:0016020
Seca9g01064 279 Gene3D - 168 271 - -
Seca9g01064 279 ProSitePatterns Syntaxin / epimorphin family signature. 184 223 IPR006012 GO:0005484|GO:0006886|GO:0016020
Seca9g01064 279 MobiDBLite consensus disorder prediction 82 101 - -
Seca9g01064 279 Coils Coil 107 127 - -
Seca9g01064 279 Coils Coil 15 45 - -
Seca9g01064 279 PANTHER SYNTAXIN 13 261 IPR045242 -
Seca9g01064 279 CDD SynN 8 165 IPR006011 GO:0016020
Seca9g01064 279 SMART tSNARE_6 173 240 IPR000727 -
Seca9g01064 279 Coils Coil 59 79 - -
Seca9g01064 279 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 178 240 IPR000727 -
Seca9g01064 279 CDD SNARE_syntaxin1-like 177 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01064 Seca-Chr9 20047025 20052804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01064 2 279 SNARE and Associated Proteins AT3G03800 75.540 1.02e-150 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01064 K08486 - gmx:100306329 480.715