LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g01051	ATGGCCTCGCTTATACTTCTCTTTTCAGAACTCGTTCGGAACCATGATCAGTGGGATGCTGCAACTCTATTAGCAGCATATCCATCCTCTTCTTATTCTGTGATGCCTTCATCAACATGTGCTGCTGCAGCTGCGAGAAAACCAGTGATAGTGAGAGACATGAAAAACAATGAGATTACTGAAGAGGCGGGTTGTTTACAATTCAGAACATTTCACAGCAATGAAGTGCATACAGGATTGGATTTTACTTGTGCGGAATCCTCTTCATTTAGTGATATGGGTAATTCAGAAAATGGATGTGATAATGAAGAAATAGAGACACCAATAATTGTGACTAAGGAGCAAGATCAATATGAGCCAAAAATTGGTGTGATGTTTTCAAATGAAGATGAAGCTTATAAGTTCTATAATGAGTATGCTAAATTCATTGGATTTACTGTGAGAAAAAACCAATATCGAAGATTGGCAGATGGAACTCTAAGGAAAGAAACAAGAACTGGTTGTCCAGCCATGATATGCTTTACAATTGAGAAGGATACTTGGATTGTTACTAAATTCATTTCTGATCATAATCATGATCTTGTGAAATCTTCTGCTCGGGCTATGTTAAGGTGCCTCTACAATTGTGAATCAGAGCAAGAGTTTGAAGAAGTATGGGCTCGTTTACTCACAAAGTTGATCTCTCAAAATGCTCCTGGTTGA	702	0.3803	MASLILLFSELVRNHDQWDAATLLAAYPSSSYSVMPSSTCAAAAARKPVIVRDMKNNEITEEAGCLQFRTFHSNEVHTGLDFTCAESSSFSDMGNSENGCDNEEIETPIIVTKEQDQYEPKIGVMFSNEDEAYKFYNEYAKFIGFTVRKNQYRRLADGTLRKETRTGCPAMICFTIEKDTWIVTKFISDHNHDLVKSSARAMLRCLYNCESEQEFEEVWARLLTKLISQNAPG.	234

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca9g01051	233	Pfam	FAR1 DNA-binding domain	161	195	IPR004330	-
	Seca9g01051	233	PANTHER	FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED	59	161	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g01051	Seca-Chr9	19803247	19811156	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Seca9g01051		FAR1	2.2e-07	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g01051	-		-	dzi:111291256	90.5077