Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01042 ATGGCTGAGCCAGAGCCACAAGGTGGTGGTGATCATGCCAATTCAGGATCTAGACGTGGTAAAGGCCCTGCTTCAAAGCGTGCCACCATGTCAACACCAAACCAAGAGGCAACAACAGCACCATGTGGGGCTTGCAAGTTCTTGAGGAGGAAATGCAATGTTGGATGCATATTTGCACCTCACTTTGGTTCAGACCAGGGTTCAGCCAGGTTTGTAGCTGTGCACAAAGTGTTTGGTGCTAGCAATGTGTCAAAGATGTTGTCCAGTATTCCAGAGGATCGCCGAAATGAAGCGGTGTCCACATTATCCTATGAGGCCCAAGCAAGAATTTCCGATCCGGTTTATGGTTGTGTCTCCACCATCCTTGCTTTACAATACACATGA 384 0.4844 MAEPEPQGGGDHANSGSRRGKGPASKRATMSTPNQEATTAPCGACKFLRRKCNVGCIFAPHFGSDQGSARFVAVHKVFGASNVSKMLSSIPEDRRNEAVSTLSYEAQARISDPVYGCVSTILALQYT. 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01042 127 ProSiteProfiles LOB domain profile. 40 127 IPR004883 -
Seca9g01042 127 MobiDBLite consensus disorder prediction 1 39 - -
Seca9g01042 127 PANTHER LOB DOMAIN CONTAINING PROTEIN 38 125 - -
Seca9g01042 127 Pfam Lateral organ boundaries (LOB) domain 41 125 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01042 Seca-Chr9 19641299 19641682 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01042 12 125 AS2 family AT3G03760 63.566 3.49e-51 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca9g01042 LOB 1.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01042 - - gmx:100813769 174.481