Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01041 ATGGCTGAGCCAGAGCCACAAGGTGGTGGTGATCATGCCAATTCAGGATCTAGACGTGGTAAAGGCCCTGCTTCAAAGCGTGCCACCATGTCAACACCAAACCAAGAGGCAACAACAGCACCATGTGGGGCTTCACCATGTGGGGCTTGCAAGTTCTTGAGGAGGAAATGCAATGTTGGATGCATATTTGCACCTCACTTTGGTTCAGACCAGGGTTCAGCCAGGTTTGCAGCTGTGCACAAAGTGTTTGGTGCTAGCAATGTGTCAAAGATGTTGTCCAGTATTCCAGAGGATCGCCGAAATGAAGCGGTGTCCACATTATCCTATGAGGCCCAAGCAAGAATTTCCGATCCGGTTTATGGTTGTGTCTCCACCATCCTTGCTTTACAATACACATGA 399 0.4912 MAEPEPQGGGDHANSGSRRGKGPASKRATMSTPNQEATTAPCGASPCGACKFLRRKCNVGCIFAPHFGSDQGSARFAAVHKVFGASNVSKMLSSIPEDRRNEAVSTLSYEAQARISDPVYGCVSTILALQYT. 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01041 132 PANTHER LOB DOMAIN CONTAINING PROTEIN 44 130 - -
Seca9g01041 132 Pfam Lateral organ boundaries (LOB) domain 46 130 IPR004883 -
Seca9g01041 132 ProSiteProfiles LOB domain profile. 45 132 IPR004883 -
Seca9g01041 132 MobiDBLite consensus disorder prediction 27 41 - -
Seca9g01041 132 MobiDBLite consensus disorder prediction 1 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01041 Seca-Chr9 19631781 19636922 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01041 12 130 AS2 family AT3G03760 65.891 3.07e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca9g01041 LOB 8.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01041 - - gmx:100813769 182.185