Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01040 ATGGCTGAGCCAGAGCCACAAGGTGGTGGTGATCATGCCAATTCAGGATCTAGACGTGGTAAAGGCCCTGCTTCAAAGCGTGCCACCATGTCAACACCAAACCAAGAGGCAACAACAGCACCATGTGGGGCTTGCAAGTTCTTGAGGAGGAAATGCAATGTTGGATGCATATTTGCACCTCACTTTGGTTCAGACCAGGGTTCAGCCAGGTTTGCAGCTGTGCACAAAGTGTTTGGTGCTAGCAATGTGTCAAAGATGTTGTCCAGTATTCCAGAGGATCGCCGAAATGAAGCGGTGTCCACATTATCCTATGAGGCCCAAGCAAGAATTTCCGATCCGGTTTATGGTTGTGTCTCCACCATCCTTGCTTTACAACAACAGGTTGAGTAA 390 0.4872 MAEPEPQGGGDHANSGSRRGKGPASKRATMSTPNQEATTAPCGACKFLRRKCNVGCIFAPHFGSDQGSARFAAVHKVFGASNVSKMLSSIPEDRRNEAVSTLSYEAQARISDPVYGCVSTILALQQQVE. 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01040 129 MobiDBLite consensus disorder prediction 1 39 - -
Seca9g01040 129 ProSiteProfiles LOB domain profile. 40 129 IPR004883 -
Seca9g01040 129 PANTHER LOB DOMAIN CONTAINING PROTEIN 38 128 - -
Seca9g01040 129 Pfam Lateral organ boundaries (LOB) domain 41 128 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01040 Seca-Chr9 19618233 19619475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01040 12 128 AS2 family AT3G03760 65.152 2.74e-54 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca9g01040 LOB 2.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01040 - - gmx:100813769 181.415