Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01039 ATGAAAAAAGGTGAACTCTTGACAACCAAGGAAGCACAGAGGAGACAACAATGTTATGATGAACTAGCATTGCATGGTCGATTCTCTTCTGCTCTTTTAGTTGTGAGGGAGCATCTTCCATCTGGAAAGGCATGCTTAAGAATAGGAAATGTTGCGCGGTTTGTAAATCATTCATGTGATGGTGGTAATTTAAGCACAAAGCTAGTTAGAAGTTCAGGAGCTTTGTTCCCCCGCCTTTGCTTCTTTGCTTTAAAAGATATCCAAGAAGATGAAGAGCTTAGTTTTAGCTATGGAGAAATCAGGAAAAGGCCTAATGGATTGCCATGCTATTGCAATAGCCCTTCTTGCTTTGGAACATTGCCCTCAGAAGACACTTGA 378 0.4101 MKKGELLTTKEAQRRQQCYDELALHGRFSSALLVVREHLPSGKACLRIGNVARFVNHSCDGGNLSTKLVRSSGALFPRLCFFALKDIQEDEELSFSYGEIRKRPNGLPCYCNSPSCFGTLPSEDT. 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01039 125 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H 4 119 - -
Seca9g01039 125 Pfam SET domain 39 98 IPR001214 GO:0005515
Seca9g01039 125 Gene3D SET domain 2 125 IPR046341 -
Seca9g01039 125 ProSiteProfiles SET domain profile. 1 98 IPR001214 GO:0005515
Seca9g01039 125 ProSiteProfiles Post-SET domain profile. 105 121 IPR003616 -
Seca9g01039 125 SUPERFAMILY SET domain 3 118 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01039 Seca-Chr9 19615964 19616362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01039 4 120 C2H2 Transcription Factor Family AT2G23740 27.692 5.20e-09 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca9g01039 SET 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01039 K11433 - gmx:100786871 222.246