Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca9g01032 | ATGTTGTGGGTGGACAAGTATCGTCCCAAATCCCTCGACCAGGTTATGGTCCACATCGATATCGCTCAAAATCTCAAGAAATTGGTTACGGAACAAGATTGCCCCCATTTACTCTTCTATGGCCCATCTGGCTCTGGCAAGAAAACCCTAATCATGGCTCTTCTCCGCCAAATGTTCGGACCCGGTGCCGAAAAGGTGAAGGTGGAAAATAGGACGTGGAAAGTGGATGCCGGAAGTAGATCTATTGATTTAGAGCTGACAACATTGTCTAGTACCAATCACATTGAAATAAGTCCAAGTGATGCAGGCTTTCAGGACAGATATGTTGTTCAAGAAGTAATCAAAGAAATGGCTAAGAATAGACCCATTGATACTAAAGGGAAGAAAGGATTTAAAGTGCTAGTGCTCAATGACGTTGACAAACTCTCTAGGGAAGCTCAACATTCTCTTCGCAGAACAATGGAGAAGTACAGTGCTTATTGCAGATTAATTCTTTGCTGCAATAGTTCTTCAAGAGTCACAGAAGCAATCCGCTCCCGTTGTCTAAATATACGAATAAATGCACCAAGTGAAGAACAGATTGTGGAAGTTTTAGAGTTCATTGGTAAGAAAGAAGGGCTGCAACTTCCTTCTGATTTTGCTACTCGCATAGCAGAGAAATCAAATCGGAATTTAAGGAGGGCCATATTGTCATTTGAGACTTGTCGTGTCCAACAGTATCCTTTCACTAGCAAACAAACAATTCCCCCAATGGACTGGGAAGAATATATTTCTGAAATTGCATCTGACATAATGAAGGAACAGAGCCCAAAAAGGTTTGCTTTTGATACAGTTCACTGTTGTCTGATCTTTGATAAATAA | 861 | 0.4111 | MLWVDKYRPKSLDQVMVHIDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGPGAEKVKVENRTWKVDAGSRSIDLELTTLSSTNHIEISPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNIRINAPSEEQIVEVLEFIGKKEGLQLPSDFATRIAEKSNRNLRRAILSFETCRVQQYPFTSKQTIPPMDWEEYISEIASDIMKEQSPKRFAFDTVHCCLIFDK. | 287 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca9g01032 | 286 | Gene3D | - | 1 | 189 | IPR027417 | - | |
| Seca9g01032 | 286 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 3 | 273 | - | - | |
| Seca9g01032 | 286 | Pfam | DNA polymerase III, delta subunit | 21 | 188 | - | - | |
| Seca9g01032 | 286 | FunFam | Replication factor C subunit 5 | 1 | 189 | - | - | |
| Seca9g01032 | 286 | CDD | AAA | 35 | 190 | - | - | |
| Seca9g01032 | 286 | Gene3D | - | 190 | 249 | - | - | |
| Seca9g01032 | 286 | SMART | AAA_5 | 33 | 192 | IPR003593 | GO:0016887 | |
| Seca9g01032 | 286 | FunFam | replication factor C subunit 3 | 190 | 248 | - | - | |
| Seca9g01032 | 286 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 240 | IPR027417 | - | |
| Seca9g01032 | 286 | CDD | HLD_clamp_RFC | 189 | 257 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca9g01032 | Seca-Chr9 | 19481246 | 19485943 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca9g01032 | 1 | 273 | Core DNA Replication Machinery Family | AT5G27740 | 83.150 | 6.13e-178 | 493 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca9g01032 | K10756 | - | gmx:100818329 | 522.702 |