Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01027 ATGGAATCTACTGAAGAAAACCACGAGCATACTGGTCATGAGATTGATAATAATGATACGAGTGTTGGTGGTTTTGAAGCTAATGGTGGTCAAGAACCTTACATTGGAATGGAATTCGAATCACAGGAAAATGCTCAATTATTCTACATGTGTTATGCTAAACGGATTGGATTTGGTGTGTCAATTAAGACTAGTCGTCGTTCAAAAATTGATAGGCAATTTATTGCTGTAAAGTATGCTTGCACAAGATATGGGAAGAAGCGAGAATCCACTGCACGTAATCCACGCCCTTGTTTGAAGGTGGAGTGTGAGGCTAGCTTATGCATTAAAAGAAGTTGTGGTGGAAAATGGGTTGTCCACGACTTCATCAAAGACCACAATCATGAGCTTTTTCCATCATATGCACACTATTTTCCTTGCCATAGAGGCATCAATCAAGCTCAAAAGCATTGTATTGAAACTTTGCAACATGTCGGAGTGAGAACAAGCAAAATTTATGCTACAATGGCCAAACAATATGGAGGTTATGAAAACATTGGCTGCTTAGAGAAAGATATTAGAAATCATTTGGACAAGGATCGTCATTTGGCTTTAGAATCAGGAGATGCAAATGCAATGTTGGAGTGTTTTATGCTTATGCAAGAAGAAAATCCAAGATTTTTTTATGCAATTGATTTAGACGATGAAGGTCGTGTGAAAAATATATTTTGGGTGGATGCAAAAGGTAGAGATGATTATCAAGAGTTTGGAGATGTAATTTCCTTTGATACAACATATATCACAAATAAGTATAAAATGCCATTTGCTCCTTTCATTGGCGTGAACAATCACTTCCAGTCAAGGCTACTTGGTTGTGCATTACTAGCAGACGAGTCTTCAAAAACTTTCTCATGGTTGATGAAAACGTGGCTTAGAGCTATGGGTGGAAAGCCTCCAAATGCAATAATAACTGATCAAGATAGAGCAATGAAAGTAGCTATTCAAGAGGTATTTCCAAATGCTCGACATCGGTTTTGTCTTTGGCACATACTAAGAAAAGTACCTGAAAAGCTTAGCCATGTATTAAGAAAACATGAAGATTTCATGACCTATCTCAACAAATGCATTTACAAGTCTTGGTCAAAGCAGCAATTTGAAGATAAATGGCAAGAAATGGTCGAGAATTTTCAGTTGGTGGAGGATGAATGGATTCAGTCTTTATATGAAGAACGTGAACATTGGATTCCTGTTTACATGAAAGATACATTTTTTGGTGGCATGTCAACAACTCAAAGATCAGAGAGCATCAACTCATTTTTCGATAAATATGTAAGCAAGAAAACTACATTGAAGGAATTTGTTGAAAAATATAAAGTTGCTTTACAAGATAGAGAGAAGTGGAAATGCAAGCTGATTTTAATACATGGCACAAGCAACCTATTCTTAAGACTCCATCACCTTTTGAGAAGCAAATGTCAATGA 1461 0.3662 MESTEENHEHTGHEIDNNDTSVGGFEANGGQEPYIGMEFESQENAQLFYMCYAKRIGFGVSIKTSRRSKIDRQFIAVKYACTRYGKKRESTARNPRPCLKVECEASLCIKRSCGGKWVVHDFIKDHNHELFPSYAHYFPCHRGINQAQKHCIETLQHVGVRTSKIYATMAKQYGGYENIGCLEKDIRNHLDKDRHLALESGDANAMLECFMLMQEENPRFFYAIDLDDEGRVKNIFWVDAKGRDDYQEFGDVISFDTTYITNKYKMPFAPFIGVNNHFQSRLLGCALLADESSKTFSWLMKTWLRAMGGKPPNAIITDQDRAMKVAIQEVFPNARHRFCLWHILRKVPEKLSHVLRKHEDFMTYLNKCIYKSWSKQQFEDKWQEMVENFQLVEDEWIQSLYEEREHWIPVYMKDTFFGGMSTTQRSESINSFFDKYVSKKTTLKEFVEKYKVALQDREKWKCKLILIHGTSNLFLRLHHLLRSKCQ. 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01027 486 Pfam FAR1 DNA-binding domain 48 132 IPR004330 -
Seca9g01027 486 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 27 463 IPR031052 GO:0006355
Seca9g01027 486 MobiDBLite consensus disorder prediction 1 27 - -
Seca9g01027 486 Pfam MULE transposase domain 252 345 IPR018289 -
Seca9g01027 486 MobiDBLite consensus disorder prediction 1 16 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01027 Seca-Chr9 19437944 19440412 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca9g01027 MULE 2.3e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01027 - - tpra:123886760 772.311