Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01015 ATGGATTCACTGCACTTCAACAGCAGTGGTTATGGTTTCTATGGGGACATGAATGCTTACCCTTCAGTTCATTTTCCTTCTTCTGCTACCCTTCCTGGTCCCCAACCTCTGTATAACACTTTTGAGGTGATGGGTCATGCTGGTGACACAGAGTCTGAAAGGTCTGATAGAGCCTTTCAGTTTTTGAACCCTTCAGTGTTCCATCCCCAAGAGAACATGGTAACAGAGAGAACCAACAATGAAGGGGATGATGGGTATTTTGGGGATAAAAACAAGAGCTTGTCTTTGCAACTTGGTGAGGAAAATGAAGCTAACAGTTCACCTGTCTCAGGGAAAATTGGACACACTAAGCTTTGTGTTAGAGGTCACTGGAGACCAGCTGAAGATGCAAAGCTTGAAGAGCTTGTTGCTCAATTTGGTCCTCAAAACTGGAACTCCATAGCAGAACATCTAGAAGGAAGATCAGGAAAAAGTTGCAGATTGAGGTGGTTTAATCAGCTAGATCCTAGAATTAACAGAACAGCTTTCACTGAGGAAGAAGAGGAGAAGCTTCTAGCTGCTCATAGAATGTATGGTAACAAATGGGCTATGATTTCTAGGCTCTTTCCTGGGAGGACTGATAATGCAGTTAAGAACCATTGGCATGTGATCATGGCTAGGAGGCAAAGGGAGCAATCATGTTTCTATAGAAGGAGAAAGCCAACATTTCAAAGCCAATCACCACCAAAAGGTTTAAATTTGACTCTGTCAAACAATGTAGCAAGTGAATCAACCATCTCAAGCACCATTGATGAATCTAACTCAACATGCACCAATCTCTCCCTCACTCCTTCTTCAGCCAGACCAATTCCTAGGCCTTTTCACAACCCAAATCATGTTCAAAATTACCAAGGCTATGGATCACCAATGGGTATGTCTGGAGGAAGCAGGGCACCAACTGGGGATGTGGGTTTTGACAAGTTTTTTAGTACCTGGAAGGGTTCATATGAGCATGGTCACATGGGAAAGCTAATGGGAGTGGACCAATCCAACTATTCAGATTCAAACTCAGAAGTTTCAGTATCTGAGTCAGTTACCACCAACAGGACTAATCTATCAAATTTTGGAGAAAGTGAAAATGTGGGGGATAAGATTAACATGTCATTTATTGACTTTCTTGGAGTAGGAGCTACATAG 1176 0.4252 MDSLHFNSSGYGFYGDMNAYPSVHFPSSATLPGPQPLYNTFEVMGHAGDTESERSDRAFQFLNPSVFHPQENMVTERTNNEGDDGYFGDKNKSLSLQLGEENEANSSPVSGKIGHTKLCVRGHWRPAEDAKLEELVAQFGPQNWNSIAEHLEGRSGKSCRLRWFNQLDPRINRTAFTEEEEEKLLAAHRMYGNKWAMISRLFPGRTDNAVKNHWHVIMARRQREQSCFYRRRKPTFQSQSPPKGLNLTLSNNVASESTISSTIDESNSTCTNLSLTPSSARPIPRPFHNPNHVQNYQGYGSPMGMSGGSRAPTGDVGFDKFFSTWKGSYEHGHMGKLMGVDQSNYSDSNSEVSVSESVTTNRTNLSNFGESENVGDKINMSFIDFLGVGAT. 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01015 391 Pfam Myb-like DNA-binding domain 173 216 IPR001005 -
Seca9g01015 391 Pfam Myb-like DNA-binding domain 121 167 IPR001005 -
Seca9g01015 391 ProSiteProfiles Myb-like domain profile. 121 167 IPR001005 -
Seca9g01015 391 FunFam MYB transcription factor 174 243 - -
Seca9g01015 391 SUPERFAMILY Homeodomain-like 120 214 IPR009057 -
Seca9g01015 391 Gene3D - 174 236 - -
Seca9g01015 391 MobiDBLite consensus disorder prediction 263 288 - -
Seca9g01015 391 FunFam MYB transcription factor 121 172 - -
Seca9g01015 391 CDD SANT 124 165 IPR001005 -
Seca9g01015 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 168 222 IPR017930 -
Seca9g01015 391 SMART sant 120 169 IPR001005 -
Seca9g01015 391 SMART sant 172 220 IPR001005 -
Seca9g01015 391 CDD SANT 183 215 IPR001005 -
Seca9g01015 391 MobiDBLite consensus disorder prediction 263 279 - -
Seca9g01015 391 ProSiteProfiles Myb-like domain profile. 168 218 IPR001005 -
Seca9g01015 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 167 IPR017930 -
Seca9g01015 391 PANTHER MYB PROTEIN-RELATED 121 271 - -
Seca9g01015 391 Gene3D - 120 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01015 Seca-Chr9 19223418 19225086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01015 91 287 MYB Transcription Factor Family AT5G17800 57.658 8.71e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca9g01015 Myb_DNA-binding 6.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01015 K09422 - jre:109000849 400.593