Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01008 ATGGGGAGGCCTCCTTGTTGTGACAAAGTAGGCATCAAGAAAGGTCCATGGACACCTGAGGAAGATATCATCCTTGTCTCTTACATCCAAGAACATGGTCCAGGAAATTGGAAATCAGTCCCAACTAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACCAACTACCTAAGGCCAGGAATCAAGAGAGGGAACTTCACTACTAATGAGGAAGGCATGATAATTCATTTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCCTACCTTCCACAAAGAACAGATAATGATATAAAGAATTATTGGAACACTCATTTGAAGAAGAAGCTGAAGAAATTTCAATTAACCAGCTTGGACTCCAACTTGGCATCAGATCACTCAACAACAACCAATGGTGACTCTGTATCTAAGATATTTTATGATAAAAGAAATTTAGTTATAAGCAGCAACCATGCCTCATCCCTTAGGCTTAATGATGATCAGTCTCAGTCTTCCTCCACCTATGCCTCAAGCACTGAGAATATCTCAAGACTCTTAAAAGGTTGGATGGGATCTTCCCCAAAGCCAGACACAGAGCATGAAAACAATAAGGTAGTAGTGAAGTCTGCATCATTGCCCCAGGAAGAGTTTGATTCTATTTTATCCTTTGAGAACCTAAACAATAATGCTCCTTGGGACAAGTCTAATTGTGATTCTATGACTCAAAATGGTTCTGAAGATGCTGCTGATGACAAGGGTCATGCTAAGTTAGAGAGGAATAGGCAAAGATCTGATGATAACAGTGCTCTTCCATTGTCATATTTTGAGAAGTGGTTGTTGGATGAAAATGTGTGTCAGGTGGAGGAGATGATAGAATTATCTCCTATGTTCTGA 891 0.4074 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWKSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTTNEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQLTSLDSNLASDHSTTTNGDSVSKIFYDKRNLVISSNHASSLRLNDDQSQSSSTYASSTENISRLLKGWMGSSPKPDTEHENNKVVVKSASLPQEEFDSILSFENLNNNAPWDKSNCDSMTQNGSEDAADDKGHAKLERNRQRSDDNSALPLSYFEKWLLDENVCQVEEMIELSPMF. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01008 296 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca9g01008 296 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca9g01008 296 Gene3D - 13 66 - -
Seca9g01008 296 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca9g01008 296 CDD SANT 16 61 IPR001005 -
Seca9g01008 296 Gene3D - 69 137 - -
Seca9g01008 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca9g01008 296 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca9g01008 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Seca9g01008 296 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca9g01008 296 CDD SANT 69 111 IPR001005 -
Seca9g01008 296 MobiDBLite consensus disorder prediction 244 263 - -
Seca9g01008 296 FunFam MYB-related transcription factor 13 66 - -
Seca9g01008 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 228 - -
Seca9g01008 296 SMART sant 66 114 IPR001005 -
Seca9g01008 296 SMART sant 13 63 IPR001005 -
Seca9g01008 296 MobiDBLite consensus disorder prediction 230 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01008 Seca-Chr9 19075328 19076828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01008 1 149 MYB Transcription Factor Family AT5G62470 73.684 2.54e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca9g01008 Myb_DNA-binding 6.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01008 K09422 - gmx:100817854 396.741