Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00989 ATGAAGCGAAAACTGCCACCTAAATCCACTCAATCCAAAGAAGAACCCCCTCTCAAGCAACAACCTCAATTCCACTTGGAAACAGAGTATGAAGAAATCGTAGAATATGTAGAAGAAGAAGAGGAAGAGGAGGAGGAGGTAGAACAAGGAGAAGACGATGATCAAGGCGACGATCAGACGGCCAAGGCGCCCTCCACGTCATCACCCGCGATGGAGGACAACGACGAAGACGACGAGCCCATCCAGAAGCTTCTAGAACCTTTCGGGAAGGACGAGATCACAAAGCTTCTGTGCGAGGCGGCGATCAAACACCGCGATGTGGCGGAGCGCATCCGTAAAGCGGCGGACGCAGACCCCGCCCACCGGAAAATCTTCGTGCACGGCCTCGGCTGGGACACTACCGCCGAAACCCTAACCACCGCGTTCCGCCAATACGGCGAGATCGAGGATTGCAAGGCCGTCTCTGACAAGGTCACCGGAAAGTCCAAGGGCTACGGCTTCATCCTCTTCAAGTCCCGCCGCGCCGCTCGCCTCGCCCTCCGCGAGCCGCAGAAGAAGATCGGCAATCGCATGACCGCTTGCCAGCTGGCATACCTTGGTCCCGTCCATGGAAACAACGCTAGCGCCTCCACTGCGGCTGCAACTCCGGGGGCTTCAGAGTACACGCAAAGGAAGATCTATGTGAGTAATGTGGGTGCCGATTTGGACCCGCGGAGGCTTTTGGCATTCTTCTCGCAGTTTGGGGAAATCGAGGAAGGGCCGTTAGGGCTTGACAAAGTGACTGGAAAACTGAGAGGGTTCTGTTTACTAGTGTACAAGAGTGTGGAAGGTGCCAAGAAGGCTTTGGAGCAGCCTCACAAGGAGTTTGAGGGTCACATTTTGCATTGTCAGAAAGCAATTGATGGTCCCAAGCAACAGCGTTTTCCATCGCAGCATCAGAATAATGCTCACACTGCAGCGGTGACAGGGTCATCGTTTCAGAGGAATGAGAATGCTGCCTTTGTTGGTGGACTTGCTGCCACCACAGTGCCGGGGCATTTGGTTGCACCAGCTGTGCCGGCCATTGGGTTTAACCAGGGAGGAGCTGCTGCGGCTGCACAGACACTGAATCCGGCTCTTGGGCAGGCGCTGACGGCGCTGCTTGCATCTCAGGGTGCTGGCTTAGGGCTGAGTGGCTTGTTGGGGACGCTAGGATCGCCAGCAGCTGTGAACAATGCTGGTCATGGATTGCAGGGTGGTTATAATAGCCAGGCAAATGTGAATCCAGCGGGTATTGCAGGGTATGGGAATCAAGTAGGATTGCAGGTTGCATATCCAAACCAGCAGCAGGTGGGGCAAGGTGGCTCTGGAAGAGGGCAGCAACAGCAGCAGCATGGTGTTGGGCAATATGGTGGTGTTGCCCCTTACATGAGCCATTAG 1419 0.5532 MKRKLPPKSTQSKEEPPLKQQPQFHLETEYEEIVEYVEEEEEEEEEVEQGEDDDQGDDQTAKAPSTSSPAMEDNDEDDEPIQKLLEPFGKDEITKLLCEAAIKHRDVAERIRKAADADPAHRKIFVHGLGWDTTAETLTTAFRQYGEIEDCKAVSDKVTGKSKGYGFILFKSRRAARLALREPQKKIGNRMTACQLAYLGPVHGNNASASTAAATPGASEYTQRKIYVSNVGADLDPRRLLAFFSQFGEIEEGPLGLDKVTGKLRGFCLLVYKSVEGAKKALEQPHKEFEGHILHCQKAIDGPKQQRFPSQHQNNAHTAAVTGSSFQRNENAAFVGGLAATTVPGHLVAPAVPAIGFNQGGAAAAAQTLNPALGQALTALLASQGAGLGLSGLLGTLGSPAAVNNAGHGLQGGYNSQANVNPAGIAGYGNQVGLQVAYPNQQQVGQGGSGRGQQQQQHGVGQYGGVAPYMSH. 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00989 472 Gene3D - 26 200 IPR012677 -
Seca9g00989 472 MobiDBLite consensus disorder prediction 32 55 - -
Seca9g00989 472 Gene3D - 201 319 IPR012677 -
Seca9g00989 472 SMART rrm1_1 123 195 IPR000504 GO:0003723
Seca9g00989 472 SMART rrm1_1 225 297 IPR000504 GO:0003723
Seca9g00989 472 SUPERFAMILY RNA-binding domain, RBD 114 201 IPR035979 GO:0003676
Seca9g00989 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 214 IPR000504 GO:0003723
Seca9g00989 472 MobiDBLite consensus disorder prediction 1 78 - -
Seca9g00989 472 MobiDBLite consensus disorder prediction 442 472 - -
Seca9g00989 472 Coils Coil 26 53 - -
Seca9g00989 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 307 IPR000504 GO:0003723
Seca9g00989 472 SUPERFAMILY RNA-binding domain, RBD 215 316 IPR035979 GO:0003676
Seca9g00989 472 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 21 314 - -
Seca9g00989 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 294 IPR000504 GO:0003723
Seca9g00989 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 190 IPR000504 GO:0003723
Seca9g00989 472 MobiDBLite consensus disorder prediction 442 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00989 Seca-Chr9 18734718 18736136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00989 223 303 C2H2 Transcription Factor Family AT2G19380 35.802 2.44e-10 60.8