Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00988 ATGGGATCACAAGTTGGGGCAGTCCAAGAGCCAAAGACTGTACCTTTGTCAAGGCAAGGGTCCCTGTATAATCTGACCCTTGATGAAGTGCAGAACCAGCTTGGAAATTTGGGGAAACCACTTGGCAGCATGAATCTGGATGAGCTGCTCAAGAGTGTGTGGAGTGCTGAAGCTGGTGAGGCCTCTGGATTGGATTTTTGTGGTGATGCTAACATGCAGCATGGTCAGCTTGCTTCTGGGTACTCTCTGAATCCACAGGGGAGCCTAACTTTGTCTGGGGATCTCAGCAAGAAAACTGTTGATGAGGTTTGGAGAGACTTACAACTGAAGAAGAGTAGTATTAGGGATAGGAAAGCTCATGAAAGAGAAAGACAGCCTACACTGGGTGAGATGACCCTGGAGGATTTTTTGGTGAAGGCTGGAGTGGTGGCTGAATCTTTTCCTACCAAGGATGGTGCCATGTCAGGGGTTGATTCAAATGGGGATTCCCAACAAAATGTTTCACAACATATCCAATGGATGCAATACCAGCTCCCTTCAGTGCAGCAGCCTCCACAGCATCAGCATCAAAATCATCAGAATAATATGATGGGGGGTTTTGTGGCTGGCCATGCCATTCAACAGCCTTTCCAGGTTGCAGTGAATCCAGTTTTGGATGCAGCAGTATCACCATCTTCTTTATTGGGTACATTATCAGATACACAAACTCTAGGTCGGAAGAGGGTTGCCTCTGGTCATGTGGTAGAGAAAACTGTAGAGAGGAGGCAAAAGAGGATGATTAAAAATAGGGAATCTGCAGCTCGGTCACGGGCAAGAAAACAGGCTTACACACAAGAACTGGAGATCAAAGTTTCACGTCTAGAAGAGGAGAATGAAAGACTTAAGAGACAGAGTGAGATAGAGAAGGTGTTGCCAACTGTGCCACCACCTGAGCCTAAGCATCAGCTTCGCAGAACAAGTTCAGCATCCTTTTGA 975 0.4667 MGSQVGAVQEPKTVPLSRQGSLYNLTLDEVQNQLGNLGKPLGSMNLDELLKSVWSAEAGEASGLDFCGDANMQHGQLASGYSLNPQGSLTLSGDLSKKTVDEVWRDLQLKKSSIRDRKAHERERQPTLGEMTLEDFLVKAGVVAESFPTKDGAMSGVDSNGDSQQNVSQHIQWMQYQLPSVQQPPQHQHQNHQNNMMGGFVAGHAIQQPFQVAVNPVLDAAVSPSSLLGTLSDTQTLGRKRVASGHVVEKTVERRQKRMIKNRESAARSRARKQAYTQELEIKVSRLEEENERLKRQSEIEKVLPTVPPPEPKHQLRRTSSASF. 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00988 324 MobiDBLite consensus disorder prediction 299 324 - -
Seca9g00988 324 SUPERFAMILY Leucine zipper domain 254 299 IPR046347 GO:0003700|GO:0006355
Seca9g00988 324 Gene3D - 252 304 - -
Seca9g00988 324 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 252 297 IPR004827 GO:0003700|GO:0006355
Seca9g00988 324 Coils Coil 270 304 - -
Seca9g00988 324 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 257 272 IPR004827 GO:0003700|GO:0006355
Seca9g00988 324 SMART brlzneu 250 318 IPR004827 GO:0003700|GO:0006355
Seca9g00988 324 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 252 304 - -
Seca9g00988 324 CDD bZIP_plant_BZIP46 254 297 - -
Seca9g00988 324 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 16 323 IPR043452 GO:0003700|GO:0045893
Seca9g00988 324 Pfam bZIP transcription factor 254 297 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00988 Seca-Chr9 18713425 18719795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00988 1 324 bZIP Transcription Factor Family AT3G56850 59.394 4.37e-113 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca9g00988 bZIP_1 9.1e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00988 K14432 - gmx:100170741 437.958