Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00972 ATGTGTAAACTCAAATTTTACTCATTTGATTACTTTCATCTGTTCCCTGTCAATTTTTCTCTGGCTGTTGCTGTGTTGCTTAATATTCTGGTTCCTCTTTACTCCCTTAGCCAAGCTTTTGAGCAAGCAAAGAGGTCTCCAGGATGTATTTTTGGCACATCAGGAGATATTGACATTGGGAAGATTCAGAATTCGAAGTATTTTCAAGCTCTTCTCCAGCAATCTAATGAAAAGGATTTGCATCAATTGGCTGATCAACTGGGGAAGCAAGACAAAGCAGGCATCACAGCATCAAAGGAAATGGTGCAAGCAAAGTTAACATCCATGTGTGGAAAAAACAGCTTGAGGACTAGTAGTAATGGTTCCAAGAGTTTATTCAACTTGAAAAACAACAGCTCTGAGGACTGCATGATTGTTGAAAGGCCTCAATCATATGCCAACCATACAAAGGGTCCTGGTGTCTCTTCATTCTTGGAAATTGAAGGAGAAGAAAGAGCTTCTGGAAACATTTTTTTGGCAAAACGTGTACACATGGAAAATAATAGCCCCAGAGTTGGTTATGTGAAGTCACCTTCAAGCAAGGAGGAAGTTAATTCCGATGTTTGTGGCAATGGGTTTGTTACTGCAAGAGCAAAATTGGAAATGGAAGTGAAGCAAAGGCGAGGAGCAGTTGGCTCACCTAGTGCATCTGTCTCACCACAGTGTGATAACAATCCTTCCAATAGGTTATATGGTGGGAGATCATATGGTGTTTCACGACGTGGCTTCCGTGGTAATTTTGTTCCCCCTATTAAATCCAATGGGAACAATAATGGAAATTCGAGTTCACGAATTGCTGGAAAGTGTGATGATTCTTTAGATGACTCTACAAAGAGATGTTTGGAAATGTTGTGTGGTCCTGATGGTGAGCTTCCTGAGAAATTGAGAAATTTAGAACCTCGCCTCATTGAACACGTTAGTAATGAGATTATGGATAAAGATCCCAATGTTCGGTGGGATGATATTGCTGGATTGGAACATGCCAAGAAATGTGTTACTGAGATGGTCATATGGCCTCTGCTACGTCCTGACATATTTAAAGGCTGCCGTTCTCCTGGGCGAGGTCTGCTTCTATTTGGTCCACCAGGAACTGGTAAAACAATGATAGGAAAAGCCATAGCAGGGGAGGCAAAGGCAACCTTCTTTTACATATCTGCAAGTTCGTTAACTAGCAAGTGGATTGGTGAAGGTGAAAAGCTAGTAAGAGCCCTTTTTGGAGTTGCCAGTTGTCGTCAGCCAGCTGTAATTTTTGTTGATGAAATAGATTCGCTACTCTCTCAGGTATGCTTATGCCCAACAAAGGCAACGTTAATATTTATTGCTAAGTCAGATGGTGAGCATGAATCAAGTAGACGGCTAAAGACACAGTTTCTCATTGAAATGGAAGGCTTTGACAGTGGTAGCGAGCAAATTCTACTTATAGGGGCAACAAATCGTCCCCAAGAGCTTGATGAAGCAGCACGAAGGAGACTTACTAAAAGACTCTATATTCCCCTACCATCCTCAGAGGCAAGAGCTTGGATTATACGTAACCTTTTGGAGAAGGATGGATTATTCAAGCTGTCAAATGAGGAAATGGATACCATATGCAACTTAACGGAAGGTTATTCAGGATCAGACATGAAAAACTTAGTGAAAGATGCTTCTATGGGTCCCCTAAGAGAGGCTTTAAAACAAGGCATAGAAATTACAAAGTTGAAAAAGGAGGATATGCGACCAGTAACTCTTCAGGACTTCGAGAATGCCCTGCAAGAAGTGAGGCCTTCTGTTTCCCCAAATGAACTTGGCACTTATGATCAATGGAACAAGCAGTTTGGAAGCCTGTCACTGTAG 1872 0.4161 MCKLKFYSFDYFHLFPVNFSLAVAVLLNILVPLYSLSQAFEQAKRSPGCIFGTSGDIDIGKIQNSKYFQALLQQSNEKDLHQLADQLGKQDKAGITASKEMVQAKLTSMCGKNSLRTSSNGSKSLFNLKNNSSEDCMIVERPQSYANHTKGPGVSSFLEIEGEERASGNIFLAKRVHMENNSPRVGYVKSPSSKEEVNSDVCGNGFVTARAKLEMEVKQRRGAVGSPSASVSPQCDNNPSNRLYGGRSYGVSRRGFRGNFVPPIKSNGNNNGNSSSRIAGKCDDSLDDSTKRCLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDKDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQVCLCPTKATLIFIAKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIIRNLLEKDGLFKLSNEEMDTICNLTEGYSGSDMKNLVKDASMGPLREALKQGIEITKLKKEDMRPVTLQDFENALQEVRPSVSPNELGTYDQWNKQFGSLSL. 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00972 623 MobiDBLite consensus disorder prediction 221 244 - -
Seca9g00972 623 FunFam Fidgetin-like 1 328 523 - -
Seca9g00972 623 Gene3D - 328 615 IPR027417 -
Seca9g00972 623 ProSitePatterns AAA-protein family signature. 484 503 IPR003960 GO:0005524|GO:0016887
Seca9g00972 623 MobiDBLite consensus disorder prediction 225 244 - -
Seca9g00972 623 SMART AAA_5 365 514 IPR003593 GO:0016887
Seca9g00972 623 FunFam Fidgetin like 1 513 599 - -
Seca9g00972 623 Pfam Vps4 C terminal oligomerisation domain 585 619 IPR015415 -
Seca9g00972 623 MobiDBLite consensus disorder prediction 260 279 - -
Seca9g00972 623 Pfam ATPase family associated with various cellular activities (AAA) 369 512 IPR003959 GO:0005524|GO:0016887
Seca9g00972 623 MobiDBLite consensus disorder prediction 263 279 - -
Seca9g00972 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 618 IPR027417 -
Seca9g00972 623 PANTHER AAA DOMAIN-CONTAINING 193 620 - -
Seca9g00972 623 Gene3D - 513 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00972 Seca-Chr9 18548784 18555032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00972 284 621 Calmodulin-binding Proteins AT3G56690 30.259 1.37e-40 157