Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00964 ATGGGGGATGAATCTAAGGAAAGCTGCACATCAATCAATAATGACAACATGGAAGAAGAAGAAGAAGTTGAAGTTGAAGAAAGAGATCCAGAAAGAAATCCATTGAATGAGCCATTGCTGAAGAGGAACAGGACACTATCTTCCAATCCACTAGCCCTGGTTGGAGCAAAAGTTTCTTACATAGAAAGCTTGGATTATGAGATCAATGAGAATGATCTATTCAAACAAGATTGGAGGAGCAGATCAAGAGCTCAAGTTTTGCAATACATATTCTTGAAATGGTCACTTGCTTTCCTTGTTGGACTTCTCACTGGTATTATAGCCACTCTCATCAATCTTGCTGTTGAGAACATTGCAGGGTTCAAGCTACTTGCTGTTGTTGAATACATCCAACAAGAAAGGTACTTGATGGGTTTCCTATATTTCACAGGCACTAATTTCCTTTTGACATTTGTTGCTGCTGTTCTGTGTGTGTTTTTTGCACCCACAGCTGCTGGACCTGGAATACCTGAAATTAAAGCTTATCTGAATGGTGTTGATACTCCCAACATGTATGGTGCTACAACATTGTTTGTTAAGATAATTGGAAGCATTGGAGCTGTGTCTGCAGGCCTAGATTTAGGAAAAGAAGGGCCATTGGTACACATTGGAAGTTGCATTGCTTCGTTACTAGGCCAAGGAGGCCCTGATAATTACAGGATCAAATGGCGGTGGTTGAGATATTTCAACAATGATCGTGACCGTCGTGATCTCATTACCTGTGGCGCTTCTTCAGGGGTTTGTGCAGCTTTCAGGGCCCCTGTGGGTGGAGTTCTCTTTGCTCTTGAAGAGGTGGCAAGTTGGTGGAGAAGTGCACTCCTTTGGAGAACTTTTTGTAGCACTGCTGTGGTTGTGGTTGTGTTAAGGGCCTTCATTGAACTCTGCAATGAAGGCAAATGTGGTCTTTTTGGTGAAGGAGGTTTGATCATGTTTGATGTCAGCAATGTCACTGTCAGGTATAATGTCATGGATATCATCCCTGTTGCCATCATTGGTGTCATTGGTGGTGTTCTTGGAAGCCTTTATAATTACCTTCTTCACAAGGTCCTCCGTCTCTACAATCTCATCAATCAGTAA 1116 0.4229 MGDESKESCTSINNDNMEEEEEVEVEERDPERNPLNEPLLKRNRTLSSNPLALVGAKVSYIESLDYEINENDLFKQDWRSRSRAQVLQYIFLKWSLAFLVGLLTGIIATLINLAVENIAGFKLLAVVEYIQQERYLMGFLYFTGTNFLLTFVAAVLCVFFAPTAAGPGIPEIKAYLNGVDTPNMYGATTLFVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVASWWRSALLWRTFCSTAVVVVVLRAFIELCNEGKCGLFGEGGLIMFDVSNVTVRYNVMDIIPVAIIGVIGGVLGSLYNYLLHKVLRLYNLINQ. 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00964 371 Gene3D Clc chloride channel 85 370 - -
Seca9g00964 371 FunFam Chloride channel ClC3 85 371 - -
Seca9g00964 371 Coils Coil 9 29 - -
Seca9g00964 371 MobiDBLite consensus disorder prediction 1 38 - -
Seca9g00964 371 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 19 370 - -
Seca9g00964 371 PRINTS Plant CLC chloride channel signature 278 286 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca9g00964 371 PRINTS Plant CLC chloride channel signature 310 317 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca9g00964 371 PRINTS Plant CLC chloride channel signature 292 302 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca9g00964 371 PRINTS Plant CLC chloride channel signature 67 75 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca9g00964 371 SUPERFAMILY Clc chloride channel 71 369 IPR014743 -
Seca9g00964 371 PRINTS Chloride channel signature 162 179 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca9g00964 371 PRINTS Chloride channel signature 193 212 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca9g00964 371 PRINTS Chloride channel signature 257 276 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca9g00964 371 Pfam Voltage gated chloride channel 150 367 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00964 Seca-Chr9 18402396 18408191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00964 26 371 Ion Channels AT3G27170 81.792 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00964 K05016 - gmx:778094 650.203