Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00933 ATGATGACTAAGCTCAACCTGAGAGCATTGGTCTTTTCCCTCTTGATGTTTGTCCCCTCATTGGGAAAAGACCTGCTGAGCTGTGAAACAACATCCCCAGATGCTTCTGGCTACCCTTGCTATGAATATGAATCACAGAGGCAATGTGAAACATTTGCACTCATTCACACAAACTCATATTACTCTTCTCTCTTCAATTTGACCTTTTACTTGGGAGTCAACCGTTTCCTAATAGCAGAAGCAAATAGGTTTCCTGCTGAAACTGAGTTCTTCTCCCAGGACCAACCTCTTTTGATACCAATTGATTGCAAGTGCAAAAGTGGCATCTTTCATGCTGCAATAACCAAAACTTGTATCAAAGGGGAGAGCTTTTATGGTATTGCTCAATCACTAGAGGGCTTGACAACATGTAAGGCTATCCAAGACAAGAACCCGGGTGTGTCACCATGGAATCTTGATGATAAAGTCAGATTGATGATCCCATTGAGATGTGCCTGCCCAGTTTTATCAAAAGTTAGCCTACAGCCAAGACTTCTGTTTTCTTATCCAGTAAGAGAAGGTGATACAATTTCTAATTTGGCTTCAAAGTTCAATATCACAATAGAAGCTATTATTTCTGCAAATCACATATCATCTGAAAGCTTTAGACCTGAAAATCTGACACCCTTTACCTCTCTTTTGATTCCACTCAATGGGGAGCCTATTCTTGGTTCTCTGGCTAAACCCTGGGAACACAATTCAGGTCTTCCACCACCCAGCATACCAGTGATAAGTTCACACAAGAAGTCAAATATGTGGACTGAATTATATATTGGGCTAGCTGGGGTTGCATTTGGATTCTGCATTGCTTTTGTAGCAGTTTTCTTTTTTGTCAGACTGAAGAACAAAAAGAATGAAGAGAATTCATGCAAGGGAAATGATGTGGAGCTACAACATCTCAACTTTAGCATAAGAACAGCCAGTAGCAGCAAAGTTTCATTTGAGGGATCTCAGTACACACATGATGGAAAAATAATTGATACCACAGCACATAAGAAGTTGCTGGAGTCATACACCATTGAAGAGATGAGGAAAGCAACTGATAACTTCAATTCCAGCAATCACATTGAGGGGTCTATGTATCATGGTCATCTAAATGGGAAAAGCATGGCAATAAAACATACAAAGACAGAGACAGTGTCAAAGATTGATTTTGGCCTTTTCCATGATGTTGCTCACCACCATCCCAACATAATTAGACTGCTGGGAACTTGTTTGATGGAGGGTCCACAATCATATTTGGTCTTTGAGTATGCCAAAAATGGATCTTTAAAAGATTGGCTTCATGGTGGCTTGGCCATCAAGAACCAGTTTATTGCTTCTTGCTATTGTTTTTTGACATGGGACCAAAGGCTCAGGATCTGCCTTGATGTGGCCATGGCCTTGCAGTATATGCACCAGGTTATGAAACCAAGCTATGTGCATAGAAATGTAAAGAGCAAAAACATCTTTTTAGATGAAGAATTTGGTGCAAAGATTGGCAATTTTGGGATGGTGGGGTGTGTTGAGAATGACACTGAGGACCCAAAATTGTATTCAACCAACCCTGCATCTTGGAGTGTGGTTTATTTGGCCCCTGAATATGTGCACCAAGGTATAGTTTCTCCAAGCATTGATATGTTTGCATATGGGGTGGTTTTGTTGGAAGTTTTGTCTGGCCAAACACCAATAAGCAGGTCCAATGAAGGAAGCCTTCTGCTTACTGATAAAATAAAGTCCATTTTGAAGTCAGAAGATGGGAATGAACTAAGGGAGTGGATGGACAGTGCATTAGGTGAAAGCTATTCATTTGATGCAGCTGTGACATTAGCCAATATTGCTAGGGCTTGTGTGGAAGAAGATTCTTCTTTGAGACCAAGTGCAGGGGAAGTTATTGAGAAGCTATCTAGATTGGTGGAGGAATTACCAGAAGGGGAGCAACACATGTTGAAGTGTGAAAGCTCATGTGAACCTCTAGTGATGGCCGTAGAAAACATTGAAGGAACCCAAAAAATGTAG 2037 0.4089 MMTKLNLRALVFSLLMFVPSLGKDLLSCETTSPDASGYPCYEYESQRQCETFALIHTNSYYSSLFNLTFYLGVNRFLIAEANRFPAETEFFSQDQPLLIPIDCKCKSGIFHAAITKTCIKGESFYGIAQSLEGLTTCKAIQDKNPGVSPWNLDDKVRLMIPLRCACPVLSKVSLQPRLLFSYPVREGDTISNLASKFNITIEAIISANHISSESFRPENLTPFTSLLIPLNGEPILGSLAKPWEHNSGLPPPSIPVISSHKKSNMWTELYIGLAGVAFGFCIAFVAVFFFVRLKNKKNEENSCKGNDVELQHLNFSIRTASSSKVSFEGSQYTHDGKIIDTTAHKKLLESYTIEEMRKATDNFNSSNHIEGSMYHGHLNGKSMAIKHTKTETVSKIDFGLFHDVAHHHPNIIRLLGTCLMEGPQSYLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWDQRLRICLDVAMALQYMHQVMKPSYVHRNVKSKNIFLDEEFGAKIGNFGMVGCVENDTEDPKLYSTNPASWSVVYLAPEYVHQGIVSPSIDMFAYGVVLLEVLSGQTPISRSNEGSLLLTDKIKSILKSEDGNELREWMDSALGESYSFDAAVTLANIARACVEEDSSLRPSAGEVIEKLSRLVEELPEGEQHMLKCESSCEPLVMAVENIEGTQKM. 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00933 678 Pfam Protein kinase domain 378 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00933 678 ProSiteProfiles Protein kinase domain profile. 342 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00933 678 Gene3D Phosphorylase Kinase; domain 1 335 431 - -
Seca9g00933 678 ProSiteProfiles LysM domain profile. 180 228 IPR018392 -
Seca9g00933 678 SUPERFAMILY Protein kinase-like (PK-like) 346 641 IPR011009 -
Seca9g00933 678 SUPERFAMILY LysM domain 180 216 IPR036779 -
Seca9g00933 678 FunFam PTI1-like tyrosine-protein kinase 3 432 655 - -
Seca9g00933 678 Gene3D LysM domain 180 229 IPR036779 -
Seca9g00933 678 Pfam LysM domain 182 229 IPR018392 -
Seca9g00933 678 SMART LysM_2 181 229 IPR018392 -
Seca9g00933 678 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 20 648 - -
Seca9g00933 678 Gene3D Transferase(Phosphotransferase) domain 1 432 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00933 Seca-Chr9 17548037 17550073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00933 37 666 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.301 1.87e-150 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca9g00933 Pkinase 4.7e-30 CL0016