LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g00933	ATGATGACTAAGCTCAACCTGAGAGCATTGGTCTTTTCCCTCTTGATGTTTGTCCCCTCATTGGGAAAAGACCTGCTGAGCTGTGAAACAACATCCCCAGATGCTTCTGGCTACCCTTGCTATGAATATGAATCACAGAGGCAATGTGAAACATTTGCACTCATTCACACAAACTCATATTACTCTTCTCTCTTCAATTTGACCTTTTACTTGGGAGTCAACCGTTTCCTAATAGCAGAAGCAAATAGGTTTCCTGCTGAAACTGAGTTCTTCTCCCAGGACCAACCTCTTTTGATACCAATTGATTGCAAGTGCAAAAGTGGCATCTTTCATGCTGCAATAACCAAAACTTGTATCAAAGGGGAGAGCTTTTATGGTATTGCTCAATCACTAGAGGGCTTGACAACATGTAAGGCTATCCAAGACAAGAACCCGGGTGTGTCACCATGGAATCTTGATGATAAAGTCAGATTGATGATCCCATTGAGATGTGCCTGCCCAGTTTTATCAAAAGTTAGCCTACAGCCAAGACTTCTGTTTTCTTATCCAGTAAGAGAAGGTGATACAATTTCTAATTTGGCTTCAAAGTTCAATATCACAATAGAAGCTATTATTTCTGCAAATCACATATCATCTGAAAGCTTTAGACCTGAAAATCTGACACCCTTTACCTCTCTTTTGATTCCACTCAATGGGGAGCCTATTCTTGGTTCTCTGGCTAAACCCTGGGAACACAATTCAGGTCTTCCACCACCCAGCATACCAGTGATAAGTTCACACAAGAAGTCAAATATGTGGACTGAATTATATATTGGGCTAGCTGGGGTTGCATTTGGATTCTGCATTGCTTTTGTAGCAGTTTTCTTTTTTGTCAGACTGAAGAACAAAAAGAATGAAGAGAATTCATGCAAGGGAAATGATGTGGAGCTACAACATCTCAACTTTAGCATAAGAACAGCCAGTAGCAGCAAAGTTTCATTTGAGGGATCTCAGTACACACATGATGGAAAAATAATTGATACCACAGCACATAAGAAGTTGCTGGAGTCATACACCATTGAAGAGATGAGGAAAGCAACTGATAACTTCAATTCCAGCAATCACATTGAGGGGTCTATGTATCATGGTCATCTAAATGGGAAAAGCATGGCAATAAAACATACAAAGACAGAGACAGTGTCAAAGATTGATTTTGGCCTTTTCCATGATGTTGCTCACCACCATCCCAACATAATTAGACTGCTGGGAACTTGTTTGATGGAGGGTCCACAATCATATTTGGTCTTTGAGTATGCCAAAAATGGATCTTTAAAAGATTGGCTTCATGGTGGCTTGGCCATCAAGAACCAGTTTATTGCTTCTTGCTATTGTTTTTTGACATGGGACCAAAGGCTCAGGATCTGCCTTGATGTGGCCATGGCCTTGCAGTATATGCACCAGGTTATGAAACCAAGCTATGTGCATAGAAATGTAAAGAGCAAAAACATCTTTTTAGATGAAGAATTTGGTGCAAAGATTGGCAATTTTGGGATGGTGGGGTGTGTTGAGAATGACACTGAGGACCCAAAATTGTATTCAACCAACCCTGCATCTTGGAGTGTGGTTTATTTGGCCCCTGAATATGTGCACCAAGGTATAGTTTCTCCAAGCATTGATATGTTTGCATATGGGGTGGTTTTGTTGGAAGTTTTGTCTGGCCAAACACCAATAAGCAGGTCCAATGAAGGAAGCCTTCTGCTTACTGATAAAATAAAGTCCATTTTGAAGTCAGAAGATGGGAATGAACTAAGGGAGTGGATGGACAGTGCATTAGGTGAAAGCTATTCATTTGATGCAGCTGTGACATTAGCCAATATTGCTAGGGCTTGTGTGGAAGAAGATTCTTCTTTGAGACCAAGTGCAGGGGAAGTTATTGAGAAGCTATCTAGATTGGTGGAGGAATTACCAGAAGGGGAGCAACACATGTTGAAGTGTGAAAGCTCATGTGAACCTCTAGTGATGGCCGTAGAAAACATTGAAGGAACCCAAAAAATGTAG	2037	0.4089	MMTKLNLRALVFSLLMFVPSLGKDLLSCETTSPDASGYPCYEYESQRQCETFALIHTNSYYSSLFNLTFYLGVNRFLIAEANRFPAETEFFSQDQPLLIPIDCKCKSGIFHAAITKTCIKGESFYGIAQSLEGLTTCKAIQDKNPGVSPWNLDDKVRLMIPLRCACPVLSKVSLQPRLLFSYPVREGDTISNLASKFNITIEAIISANHISSESFRPENLTPFTSLLIPLNGEPILGSLAKPWEHNSGLPPPSIPVISSHKKSNMWTELYIGLAGVAFGFCIAFVAVFFFVRLKNKKNEENSCKGNDVELQHLNFSIRTASSSKVSFEGSQYTHDGKIIDTTAHKKLLESYTIEEMRKATDNFNSSNHIEGSMYHGHLNGKSMAIKHTKTETVSKIDFGLFHDVAHHHPNIIRLLGTCLMEGPQSYLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWDQRLRICLDVAMALQYMHQVMKPSYVHRNVKSKNIFLDEEFGAKIGNFGMVGCVENDTEDPKLYSTNPASWSVVYLAPEYVHQGIVSPSIDMFAYGVVLLEVLSGQTPISRSNEGSLLLTDKIKSILKSEDGNELREWMDSALGESYSFDAAVTLANIARACVEEDSSLRPSAGEVIEKLSRLVEELPEGEQHMLKCESSCEPLVMAVENIEGTQKM.	679

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca9g00933	678	Pfam	Protein kinase domain	378	639	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Seca9g00933	678	ProSiteProfiles	Protein kinase domain profile.	342	644	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Seca9g00933	678	Gene3D	Phosphorylase Kinase; domain 1	335	431	-	-
Seca9g00933	678	ProSiteProfiles	LysM domain profile.	180	228	IPR018392	-
Seca9g00933	678	SUPERFAMILY	Protein kinase-like (PK-like)	346	641	IPR011009	-
Seca9g00933	678	SUPERFAMILY	LysM domain	180	216	IPR036779	-
Seca9g00933	678	FunFam	PTI1-like tyrosine-protein kinase 3	432	655	-	-
Seca9g00933	678	Gene3D	LysM domain	180	229	IPR036779	-
Seca9g00933	678	Pfam	LysM domain	182	229	IPR018392	-
Seca9g00933	678	SMART	LysM_2	181	229	IPR018392	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g00933	Seca-Chr9	17548037	17550073	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g00933	37	666	LysM Receptor-like Kinase (LYKs) Gene Family	AT3G01840	40.301	1.87e-150	449

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Seca9g00933		Pkinase	4.7e-30	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g00933	-		-	gmx:100816082	1004.2

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