Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00908 ATGAATGAAAGATTTGGACGAGAGATTCGTGTTTTTCAAACATCTTCACTTTCTCCGTCACCAAATGCTGCAGCAAACAATGAAGAGGAGACTGATGACTTCTATGAGTTTACTGCTGAAGACTATCACAGACTTTTGGCTACTAAAAAGGAAGATAAATTCTTGAAGACTCGAAAAATCCGAGAAGCAGAAGAAGCAGCTCGTAGGTCAAGAATAACCAAAGCTGTAATTAGAGTTCGCTTCCCTGATAATCACACATTGGAGGCTACCTTTCACCCATCAGAAACAATCGCGAGTTTAATTAATCTCCTCGCTAAAGTGATTGCACAACCAGAGCAGCCATTTTATATATATACTACTCCACCTAAGAAGCTGATCAAAGACACGTCTCAGGATTTCTATACTGCTGGATTTTGTCCTGGTGCCATTGTGTACTTCTCATACAATGTTCCAAAAGGTGAGTTCCTGCTGTCAGGAGAATAA 483 0.4017 MNERFGREIRVFQTSSLSPSPNAAANNEEETDDFYEFTAEDYHRLLATKKEDKFLKTRKIREAEEAARRSRITKAVIRVRFPDNHTLEATFHPSETIASLINLLAKVIAQPEQPFYIYTTPPKKLIKDTSQDFYTAGFCPGAIVYFSYNVPKGEFLLSGE. 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00908 160 Pfam UBX domain 73 141 IPR001012 GO:0005515
Seca9g00908 160 CDD UBX2_UBXN9 75 148 - -
Seca9g00908 160 Gene3D - 8 145 - -
Seca9g00908 160 ProSiteProfiles UBX domain profile. 70 146 IPR001012 GO:0005515
Seca9g00908 160 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1 2 154 IPR044232 GO:0032984|GO:0051117
Seca9g00908 160 SUPERFAMILY Ubiquitin-like 48 146 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00908 Seca-Chr9 17253735 17256446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00908 3 100 C2H2 Transcription Factor Family AT2G01650 36.275 1.23e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00908 K15627 - gmx:100818386 251.136