Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00899 ATGGGAAGACAGCCATGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACAATTGAGGAAGATCATAAGCTCATGAATTTCATCCTCAACAATGGCATCCACTGCTGGCGAACAGTTCCTAAGCTTGCAGGACTTCTAAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGGCCAGACCTCAAGAGAGGTGGCTTTACAGAAATGGAAGAGGATCAAATTATACAACTACATTCATGTCTTGGTAACAGGTTTCCAGGGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAAAATCAAGAAGAGGTTGAAGCTCCTTGGTCTGGATCCTGTGACCCTGAAGCCAATTGAGCAAAAGGAACAGTCTGATGATGACAAAAATAAGAGAGACATACAGCCAATTACTTCAAAAAGGCCTGAAGGTGTGGAGAATAATTCCTTGGACATTCATCATGGCAGAGAAGAAATGCCAAAAACAGAAGGGAGAAGAGAGGAAGATAAGGTGATTTGGGATGATACCTCCTCAGGATTTTTAAACAATTATGAAATGCTATGCTCACAGTTGGACTTGGGATCATGGATGAGTCAAGAAACCAAAACCAGTACTAGTTCTTACTGTAGTTCTTCTTTCTCTCTGGATGATTCTACCAACCTTTCTGTGGGTGAATCCCCTTGCCTTAAGGATAATTCATTACAACAATGGGTTGATGGTTTGGATTCCATTCTCTCATGGGATAGCTTCAATCCTCTTGAAAAAGATTTTTATCTTCTTGGAAAATAA 798 0.406 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSCLGNRFPGRTDNEIKNHWNTKIKKRLKLLGLDPVTLKPIEQKEQSDDDKNKRDIQPITSKRPEGVENNSLDIHHGREEMPKTEGRREEDKVIWDDTSSGFLNNYEMLCSQLDLGSWMSQETKTSTSSYCSSSFSLDDSTNLSVGESPCLKDNSLQQWVDGLDSILSWDSFNPLEKDFYLLGK. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00899 265 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca9g00899 265 MobiDBLite consensus disorder prediction 121 171 - -
Seca9g00899 265 CDD SANT 16 61 IPR001005 -
Seca9g00899 265 Gene3D - 11 65 - -
Seca9g00899 265 SUPERFAMILY Homeodomain-like 11 101 IPR009057 -
Seca9g00899 265 FunFam MYB transcription factor 11 67 - -
Seca9g00899 265 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 214 - -
Seca9g00899 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 109 IPR017930 -
Seca9g00899 265 SMART sant 13 63 IPR001005 -
Seca9g00899 265 SMART sant 66 107 IPR001005 -
Seca9g00899 265 Gene3D - 66 110 - -
Seca9g00899 265 MobiDBLite consensus disorder prediction 149 171 - -
Seca9g00899 265 MobiDBLite consensus disorder prediction 122 142 - -
Seca9g00899 265 CDD SANT 70 103 IPR001005 -
Seca9g00899 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca9g00899 265 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00899 Seca-Chr9 17191525 17193009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00899 1 146 MYB Transcription Factor Family AT5G16600 64.286 1.27e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca9g00899 Myb_DNA-binding 8.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00899 K09422 - gmx:100819471 444.891