Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00892 ATGGAGGATATTGAACCTGATATAGAAAGGCACACCCAGGAAGATGATGCAGAAAGTGAATGTCCAATATCACTTCTGGAGAGTCAGAACCCCAAGGATTCCGCTGTTGCAGACAGTAACAAGGTCATTGACAAAGAGAATCAGTGTACAAGCCCAAATAACTGTCCTGTTGGCATCGATGAATGTCAGACCTCAAATATTTCCCATGATGACAAATTACATAATGATGTCTGTGATGAACAGCTGTGTCAGAACCCCAATGCTACATTTATATCAATGACCGATACTGATGTAGAAAATGAGGAATTATATGTGGCTCCAGAGATTGGAATGGAGTTTGAATCAGAAGATCATGCTTACAAGTGTTATAGCAAGTATGCTGTTCTCAATGGTTTCAGCATAAGAAAGGATTTTGTCAACAAAAGTAAGATAGATGGTGCAGTGGTGTCCAGAAGATACACCTGCCACAGACAGGGTTATCGTCCTAACAGAAATGGTACATACATAAGGAAATTCCAGCACGAAACAAGGACTGGTTGCTTAGCACATATGACTATCGGTCGTCAGCCAAAGGGCAAGTTTCGTGTCACTAGTTTTGAAAGAGAGCACAATCATGAGTTTGTAACACCCTGTACTGCTCATATGTTACCATCACAGAAAAGATTGAGTTTTGCTCAAGCTGTTGAAGCGAACATAACTGAGTGCAGGTTGGATGGGGTACCAAAACTGGGAATGGGATTTGACTCAGAGGAGCATGCATATGAATTTTATAATACATATGCTGGACGTGTAGGTTTCAGTGTAAGAAAAGATTATGTAAATAGGAGTAAAGTTGATGGAGCTGTAGCATCTAGAAGGTTTACTTGCTTCAGAGAAGGTTTTCGGCAGAAGGACAAGCGGGATATGAATGTAAAGAGACCTCGGAAGGAAACACGGATTGGGTGTTTGGCACAATTGGTTATTTCTCGACAACCTGATGGTAGGTATCATGTAACTCACTTTGAAGAAAAGCATAATCATGAGCTTGTTGCTGCATGTAGAGCTCATATGTTAAGGTCACAGAAGAGGTTAGCTGCAACCGAAGTTGAAAACAACCTTGAAGATGGACCCAATATGCTGCCTAAGTCAGCCTCTGAATCCAATTGCAGGACTGTTGAAGGTTTTCATGATCTGGATTATGATCCTGTAGATTATGAATATAAACTACCTTTCAAATCCACAAGAGAAATAAAAGCAGGAGAAATTGAAAAGATTAGGCACCACTTTCAAAGCAAGCAATCAAAGAATCCTTCTTTCTTTTATGCTTTCCAGCTTGATGCTGATGATCAAGTAACTAATATATTTTGGGCTGATGCAAAGATGATAGTAGACTACAGTGATTTTGGTGATGTTGTTTGTTTTGATAGTAGTTATAAATTTTACAAGGACTCCCGCCCATTTTCTCCATTCCTTGGTATAAATAATCACAAACAAATGATTATCTTTGGGGCTGCACTTCTATATAATGAATCTCTGGAATCTTTAAAGTGGTTGTTTCGAGTTTTCATTGAGGCAATGTCTGGAAGCAAGCCAAAGACAATCCTAACAGATCAAGATGCAATTATAGCTGAAGCAATTAATTCCACATTACCTCAAACGAATCACCGAGTTTGTGCCTGGCATGTCTACCAAGATGCCCTCAAGCAACTGAGCCATATGTCTGTTGAATCTGGTTCTTTTGTAAATGATTTGAGCAGCTGCTTTTTTTATCATGAGGAGGAGGAGGATTTTGTTAATGTATGGAATACTCTCCTGGACACTTATAATCTGTGGGAAAATGAATGTTTGCGTCAAATATATGAAAGCAGAGACCAATGGGCCATAGCATATGGAAGACATATTTTTTGTGCTGACATAGCTAACATACTACTGAGAGAAAACCTTACTGGAAACCTGAAAAAGCACCTAAAGGATGACTCAGATGTTCTTCCATTTTTCAAGCATCTTGCAAAGGTGGTGACTGATTGGCACTACAAAGAATTACAAGCCAATTATGACATGAGCCAGCGTATGCCAGCCCTGATGGGCGATATCATTACGTTAAAGCATGCAAGAGATACATACACACCAAAGATGTTTGAGTTATTCCAGGAAGAATATGAGGCATCTTTAAATCTAGTCATAAATCATTGCACTGAGAGTGGGTCATTGTATAATTATAAAGTAAGCATATATGAACAGGTACGGGAGTATTCAGTTTCTTTTGATTCATCTAATGAGACAATCAGTTGCAGCTGTATGAAATTTGAGTATGTGGGAATCTTATGCAGCCATGCATTAAAAGTTCTTGATTATAGGAACATAAGGATAGTTCCAGCCCAGTACATCTTAAAGAGATGGACTAAAGATGCTATAGTTTGA 2400 0.3896 MEDIEPDIERHTQEDDAESECPISLLESQNPKDSAVADSNKVIDKENQCTSPNNCPVGIDECQTSNISHDDKLHNDVCDEQLCQNPNATFISMTDTDVENEELYVAPEIGMEFESEDHAYKCYSKYAVLNGFSIRKDFVNKSKIDGAVVSRRYTCHRQGYRPNRNGTYIRKFQHETRTGCLAHMTIGRQPKGKFRVTSFEREHNHEFVTPCTAHMLPSQKRLSFAQAVEANITECRLDGVPKLGMGFDSEEHAYEFYNTYAGRVGFSVRKDYVNRSKVDGAVASRRFTCFREGFRQKDKRDMNVKRPRKETRIGCLAQLVISRQPDGRYHVTHFEEKHNHELVAACRAHMLRSQKRLAATEVENNLEDGPNMLPKSASESNCRTVEGFHDLDYDPVDYEYKLPFKSTREIKAGEIEKIRHHFQSKQSKNPSFFYAFQLDADDQVTNIFWADAKMIVDYSDFGDVVCFDSSYKFYKDSRPFSPFLGINNHKQMIIFGAALLYNESLESLKWLFRVFIEAMSGSKPKTILTDQDAIIAEAINSTLPQTNHRVCAWHVYQDALKQLSHMSVESGSFVNDLSSCFFYHEEEEDFVNVWNTLLDTYNLWENECLRQIYESRDQWAIAYGRHIFCADIANILLRENLTGNLKKHLKDDSDVLPFFKHLAKVVTDWHYKELQANYDMSQRMPALMGDIITLKHARDTYTPKMFELFQEEYEASLNLVINHCTESGSLYNYKVSIYEQVREYSVSFDSSNETISCSCMKFEYVGILCSHALKVLDYRNIRIVPAQYILKRWTKDAIV. 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00892 799 ProSiteProfiles Zinc finger SWIM-type profile. 744 780 IPR007527 GO:0008270
Seca9g00892 799 Pfam SWIM zinc finger 733 779 IPR007527 GO:0008270
Seca9g00892 799 Pfam FAR1 DNA-binding domain 255 343 IPR004330 -
Seca9g00892 799 Pfam FAR1 DNA-binding domain 123 208 IPR004330 -
Seca9g00892 799 SMART 26again6 755 782 IPR006564 GO:0008270
Seca9g00892 799 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 97 226 IPR031052 GO:0006355
Seca9g00892 799 MobiDBLite consensus disorder prediction 1 18 - -
Seca9g00892 799 MobiDBLite consensus disorder prediction 1 35 - -
Seca9g00892 799 Pfam MULE transposase domain 464 557 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00892 Seca-Chr9 17130654 17134139 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca9g00892 MULE 1.6e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00892 K17604 - gmx:102659753 1308.51